-
uom
Units of measurement
-
rust-htslib
This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files
-
peroxide
Rust comprehensive scientific computation library contains linear algebra, numerical analysis, statistics and machine learning tools with farmiliar syntax
-
finch
An implementation of min-wise independent permutation locality sensitive hashing ('MinHashing') for genomic data and command-line utility for manipulation
-
rustfst
Library for constructing, combining, optimizing, and searching weighted finite-state transducers (FSTs)
-
rust_decimal_macros
Shorthand macros to assist creating Decimal types
-
finch_cli
An implementation of min-wise independent permutation locality sensitive hashing ('MinHashing') for genomic data and command-line utility for manipulation
-
atg
Convert transcripts between different file formats
-
mwa_hyperbeam
Primary beam code for the Murchison Widefield Array (MWA) radio telescope
-
splines
Spline interpolation made easy
-
alevin-fry
A suite of tools for the rapid, accurate and memory-frugal processing single-cell and single-nucleus sequencing data
-
feos
FeOs - A framework for equations of state and classical density functional theory
-
alignoth
A tool for creating alignment plots from bam files
-
birli
A preprocessing pipeline for the Murchison Widefield Array
-
light_phylogeny
Methods and functions for phylogeny
-
genovo
Determine genes with significantly more mutations than expected by chance
-
rust-bio-tools
A set of fast and robust command line utilities for bioinformatics tasks based on Rust-Bio
-
noodles
Bioinformatics I/O libraries
-
nucleob
bioinformatics: nucleobases and amino acids statistics
-
ocl
OpenCL bindings and interfaces for Rust
-
i3owm
Weather and ISS spotting extension for i3status
-
grib-cli
CLI application for processing GRIB format data, built on the top of the library
grib -
lt-fm-index
Fm-index using k-mer lookup table for exact pattern matching
-
roqoqo
Rust Quantum Computing Toolkit by HQS
-
consprob
Quick Probability Inference Engine on RNA Structural Alignment
-
quantity
Representation of quantites, i.e. of unit valued scalars and arrays.
-
faiss
High-level bindings for Faiss, the vector similarity search engine
-
minimap2
Bindings to libminimap2
-
biodivine-lib-param-bn
Library for working with parametrized Boolean networks
-
libceed
High-level interface for libCEED - the efficient high-order discretization library developed by the ECP co-design center CEED
-
fitsio
Rust implmentation of astronomy fits file handling
-
bio-seq
Bit packed and well-typed biological sequences
-
h2n5
HTTP 2 N5: Serve N5 datasets over HTTP as tiled image stacks
-
neomake
Yet another task runner as make alternative, inspired by GitLab pipelines
-
rgpsd
A minimal replacement for gpsd in rust
-
Nuclide
An up-to-date database of nuclide and isotope properties
-
astrology
Astrology lib connected to the C lib Swiss ephemeris
-
light-curve-feature
Feature extractor from noisy time series
-
perbase
Fast and correct perbase BAM/CRAM analysis
-
mikino
A simple induction and BMC engine
-
nanoq
Minimal but speedy quality control and summaries of nanopore reads
-
adsb_deku
Decoder for ADS-B(Automatic Depedent Surveillance-Broadcast) - written with deku
-
chemfiles
Modern library for chemistry trajectories reading and writing
-
rpgtools
Collection of utilities to help run tabletop role-playing games
-
sketchy-rs
Rust command line client for Sketchy
-
samcomp
A comparison tool for Sequence Alignment/Map files
-
ndarray_einsum_beta
Implementation of the einsum function for the Rust ndarray crate. As popularized in numpy, einsum (Einstein summation) implements general multidimensional tensor contraction. Many linear…
-
nlopt
Wrapper for the nlopt library
-
rasusa
Randomly subsample reads to a specified coverage
-
sci-rs
Rust library behind sciprs like scipy
-
fqkit
fqkit: a simple program for fastq file manipulation
-
mikino_api
A simple induction and BMC engine
-
compute
A crate for statistical computing
-
ta
Technical analysis library. Implements number of indicators: EMA, SMA, RSI, MACD, Stochastic, etc.
-
rustronomy-fits
a rust library for reading and writing fits files
-
qoqo_calculator
qoqo-calculator is the calculator backend of the qoqo quantum computing toolkit by HQS Quantum Simulations
-
mech-core
The Mech language runtime. It's a small dataflow engine that accepts transactions of changes, and applies them to a compute network.
-
casmap
A way to count and characterize constructs for cas12 6-plex CRISPR screens
-
rnapkin
CLI utility for drawing RNA secondary structure
-
biodivine-hctl-model-checker
Library for symbolic HCTL model checking on partially defined Boolean networks
-
planetarium
Sub-pixel precision light spot rendering library
-
pn-editor
A powerful program to view, edit and simulate petri nets
-
verify-same-kmer-content
Verify that an SPSS has the same kmer content as a set of unitigs
-
moc
Library made to create and manipulate HEALPix Multi-Order Coverages maps (MOCs), see https://ivoa.net/documents/MOC/
-
hpo
Human Phenotype Ontology Similarity
-
integrustio
pyFAI on rusty steroids: fast powder x-ray scattering integration and distortion correction
-
qecp
Quantum Error Correction Playground for Surface Code Research
-
libradicl
support library for alevin-fry
-
adskalman
Kalman filter and Rauch-Tung-Striebel smoothing implementation using nalgebra, no_std
-
rsmt2
Wrapper for SMT-LIB 2 compliant SMT solvers
-
casgen
A way to generate cas12 6-plex CRISPR sequences
-
feos-dft
Generic classical DFT implementations for the
feosproject -
noodles-bed
BED (Browser Extensible Data) reader
-
libzettels
A library intended as a backend for applications which implement Niklas Luhmann's system of a 'Zettelkasten'
-
ontime
Extract subsets of ONT (Nanopore) reads based on time
-
noodles-tabix
Tabix (TBI) format reader and writer
-
opencloudtiles
A toolbox for converting, checking and serving map tiles in various formats
-
periodicelements
A periodic information tool
-
consprob-trained
Trainable Probability Inference Engine on RNA Structural Alignment
-
simple-si-units
A Rust library providing base SI Units and common conversions. SI Units are provided as templated types so that you can write APIs that enforce correct units
-
rinex
Package to parse and analyze RINEX data
-
bio-jtools
A suite of bioinformatics tools for interacting with high throughput sequencing (HTS) data
-
fenris
A library for advanced finite element computations in Rust
-
openslide-rs
Rust bindings of OpenSlide C library
-
ngt
Rust wrappers for NGT nearest neighbor search
-
barcode-count
NGS barcode counter for DEL, CRISPR-seq, and Barcode-seq
-
taxonomy
Routines for loading, saving, and manipulating taxonomic trees
-
pdbtbx
A library to open/edit/save (crystallographic) Protein Data Bank (PDB) and mmCIF files
-
mendeleev
List of chemical elements, their isotopes, and their properties
-
vrp-cli
A command line interface for VRP solver
-
roqoqo-qryd
QRyd interface for roqoqo rust quantum computing toolkit
-
yakf
Yet Another Kalman Filter Implementation, as well as, Lie Theory (Lie group, algebra, vector) on SO(2), SO(3), SE(2) and SE(3). [no_std] is supported by default.
-
genomicsqlite
Genomics Extension for SQLite
-
twobit
Pure Rust implementation of the TwoBit sequence file format
-
reverse_geocoder
Offline reverse geocoder library
-
asynchronix
A high performance asychronous compute framework for system simulation
-
atglib
A library to handle transcripts for genomics and transcriptomics
-
fetch-data
Fetch data files from a URL, but only if needed. Verify contents via SHA256.
-
guide-counter
Fast and accurate guide counting for CRISPR screens
-
noodles-csi
Coordinate-sorted index (CSI) format reader and writer
-
dms-coordinates
Package to handle D°M'S'' coordinates
-
consalign
RNA Structural Aligner Based on Transfer-learning and Thermodynamic Ensemble Model
-
openweathermap
easy access current weather data from OpenWeatherMap
-
noodles-bam
Binary Alignment/Map (BAM) format reader and writer
-
cosmology
An early-in-development crate aiming to provide a lot of utilities commonly used in cosmology
-
eggmine
Inference of solutions for academic multiple choice tests, based on candidates' answers and grades
-
noodles-gtf
Gene Transfer Format (GTF) reader and writer
-
noodles-sam
Sequence Alignment/Map (SAM) format reader and writer
-
average
Calculate statistics iteratively
-
roqoqo-aqt
AQT interface for roqoqo rust quantum computing toolkit
-
fasten
A set of scripts to run basic analysis on fastq files
-
blutils
A utility to make it easier to run and analyze Blast results
-
nonogrid
Efficient nonogram solver
-
serenade
Serenade: Session-based recommender system
-
fakit
fakit: a simple program for fasta file manipulation
-
varlociraptor
A library for calling of genomic variants using a latent variable model
-
geodesy
A platform for experiments with geodetic transformations and data flow
-
kseq
a simple fasta/fastq format parser library
-
arcon
A runtime for writing streaming applications
-
coco-sys
Generated Rust bindings for COCO benchmarking framework
-
itertools-num
Numerical iterator tools. Extra iterators and iterator methods and functions.
-
msbwt2
msbwt2 - multi-string BWT query library
-
iso8211
ISO 8211 data format library
-
fxtools
A collection of commandline Fasta/Fastq utility tools
-
fenris-sparse
Sparse matrix functionality for fenris
-
lattice-qcd-rs
Lattice QCD simulation
-
rustmex
Rustmex: providing convenient Rust bindings to Matlab MEX API's
-
goat-cli
Query metadata for any species across the tree of life
-
xtcat
Fast XTC file concatenator
-
salsa
A generic framework for on-demand, incrementalized computation (experimental)
-
noodles-fasta
FASTA format reader and writer
-
fastqc-rs
A fast quality control tool for FASTQ files written in rust
-
fmlrc
FM-index Long Read Corrector - Rust implementation
-
fastx-statistics
Compute simple statistics for fasta-like files
-
antler
Antler rendering engine
-
calcify
Physics vector library
-
bufkit-data
A crate to manage an archive of bufkit files
-
stac
Rust library for the SpatioTemporal Asset Catalog (STAC) specification
-
pooled-writer
Library for using N threads to write to M compressed files/writers
-
fenris-optimize
Optimization functionality used by fenris
-
sbd
Read and write Iridium Short Burst Data (SBD) messages
-
opencl-heads
Actively Maintained with Long Term Support, Pure Rust Implementation, Low Level bindings for OpenCL
-
rna-ss-params
Library of RNA secondary structure parameters
-
fusion-blossom
A fast minimum-weight perfect matching solver for quantum error correction
-
noodles-cram
CRAM format reader and writer
-
bader
Grid based Bader charge partitioning
-
mirror_sparse_matrix
Some tools that are 'internal' for now because they are insufficiently refined and unstable, but which are used by other 'public' crates
-
bedrs
Genomic interval library in rust
-
pineappl_capi
C language interface to PineAPPL
-
totsu
Convex optimization problems LP/QP/QCQP/SOCP/SDP that can be solved by
totsu_core -
pineappl_cli
Read, write, and query PineAPPL grids
-
obofoundry
Structures to deserialize OBO Foundry listings into
-
genome-graph
Representation of genome graphs
-
bed-reader
Read and write the PLINK BED format, simply and efficiently
-
select-random-fastx
Select random entries from fastx files
-
rustfst-ffi
Library for constructing, combining, optimizing, and searching weighted finite-state transducers (FSTs). Rustfst-ffi provides C interfaces of the Rust library
-
mlinrust
A machine learning library in Rust from scratch
-
gchemol
gchemol: a Graph-based CHEMical Objects Library
-
vsop87
Pure Rust VSOP87 algorithm implementation. Includes all VSOP87 algorith versions: VSOP87, VSOP87A, VSOP87B, VSOP87C, VSOP87D and VSOP87E. VSOP87 are a family of algorithms used to predict the position of planets in the…
-
roqoqo-mock
Mocked interface for roqoqo rust quantum computing toolkit
-
gmt-fem
Giant Magellan Telescope Finite Element Model
-
ranked_voting
Industrial-strength implementation of the instant-runoff voting algorithm (library and command line interface)
-
d4-hts
The htslib binding used by D4
-
fasta_tools
Some tools that are 'internal' for now because they are insufficiently refined and unstable, but which are used by other 'public' crates
-
roqoqo-qasm
QASM interface for roqoqo rust quantum computing toolkit
-
bigtools
A library and associated tools for reading and writing bigwigs and bigbeds
-
iroh-metrics
Iroh metrics
-
ruststep
A STEP toolkit for Rust
-
bacon-sci
Scientific computing in Rust
-
sgcount
A fast and flexible sgRNA counter
-
umgap
The Unipept Metagenomics Analysis Pipeline
-
bayespam
A simple bayesian spam classifier
-
fitsio-sys
FFI wrapper around cfitsio
-
wmm
WMM no_std library used to calculate the magnetic declination
-
gchemol-core
Core chemical objects for gchemol
-
fenris-traits
Core traits used by fenris
-
wybr
Collection of preferential voting methods
-
aoflagger_sys
Rust bindings for the aoflagger C++ library
-
noodles-core
Shared utilities when working with noodles
-
poi
A pragmatic point-free theorem prover assistant
-
gfa
Library for working with graphs in the GFA (Graphical Fragment Assembly) format
-
htsget-search
This crate is the primary mechanism by which htsget-rs interacts with, and processes bioinformatics files. It does this by using [noodles] to query files and their indices
-
libceed-sys
Low-level bindings for libCEED library
-
surge-lipol
surge synthesizer -- linear interpolation struct
-
tree-sitter-graph
Construct graphs from parsed source code
-
espr
EXPRESS Language compiler
-
noodles-fastq
FASTQ format reader and writer
-
mech-utilities
Shared components and utilities for Mech
-
qoqo-aqt
AQT backend for qoqo quantum computing toolkit
-
cosmogony
Provides geographical zones with a structured hierarchy
-
varfish-server-worker
Rust-based workers for varfish-server
-
fxread
A barebones fastx reader for rust
-
sgp4-rs
Rust wrapper around the Vallado SGP-4 orbital propagator
-
struqture
HQS tool for representing operators, Hamiltonians and open systems
-
openbabel
Rust bindings to cheminformatics toolbox OpenBabel
-
rustronomy-core
core dependency for rustronomy crates providing interoperable types
-
pineappl
PineAPPL is not an extension of APPLgrid
-
grib
GRIB format parser for Rust
-
crseo
Cuda Engined Optics Rust Interface
-
aws-smt-ir
Intermediate representation for SMT problems
-
fqtk
A toolkit for working with FASTQ files
-
treebender
An HDPSG inspired symbolic NLP library for Rust
-
rna-algos
Library of RNA Bioinformatics Algorithms
-
ngt-sys
Native bindings to the NGT library
-
drug-extraction-core
A core library for extracting drugs from text records
-
census2csv
Convert TMT multiplexed proteomics data in the Census format to CSV files
-
dimensioned
Compile-time dimensional analysis for various unit systems using Rust's type system. Dimensioned aims to build on Rust's safety features by adding unit safety with no runtime cost…
-
fastobo-owl
OWL language mapping for ontologies in the OBO flat file format 1.4
-
alpha-g-analysis
Executables that perform common post-processing/offline analysis on the data of the ALPHA-g experiment
-
periodic-table-rs
A chemistry library written in Rust
-
syncmers
Rust library for finding syncmers
-
distmat
Distance matrix data types and file formats
-
rsofa
Rust bindings of IAU SOFA C Library
-
feos-core
Core traits and functionalities for the
feosproject -
balance-tui
CLI/TUI chemical equation balancer
-
gchemol-graph
Networkx-like API wrapper around petgraph
-
gmt_dos-actors
Giant Magellan Telescope Dynamic Optical Simulation Actor Model
-
entromatica
A simulation library for markov chains with a uniform steady state distribution centered around their entropy
-
disambiseq
Create unambiguous one-off mismatch libraries for DNA sequences
-
fastq
A parser for fastq
-
sigalign
Pairwise alignment algorithm using gap-affine penalty for nucleotide and amino-acid sequences
-
fffx
Another fasta/q/x file format parser. Well fuzzed.
-
skyangle
Astronomical angles manipulations
-
gad
Generic automatic differentiation for Rust
-
adjustp
A crate to handle different p-value adjustments
-
puruspe
Pure Rust Special function library
-
latex2mathml
Convert LaTeX equations to MathML
-
stardust-xr-molecules
Widget library for Stardust XR, built on top of Fusion
-
gosh-core
A meta package for managing shared dependencies in gosh project
-
s100
S-100 IHO Universal Hydrographic Data Model
-
lhapdf
(Unofficial) Rust bindings for the LHAPDF C++ library
-
rastro
A modern space dynamics library for research and engineering applications. Designed to be high performance, easy to learn, and fast to code, and ready for flight
-
gchemol-neighbors
Neighborhood search for chemistry
-
crx2rnx
RINEX decompression tool
-
fastobo-validator
Faultess validation tool for OBO products
-
fastx
FastX reads Fasta and FastQ files with little overhead
-
libmcl-sys
This system crate provides Rust language bindings to the Minos Compute Library (MCL)
-
hts-sys
This library provides HTSlib bindings
-
nwws-oi
A client for the NOAA Weather Wire Service Open Interface
-
git-busy
A wrapper around "git commit" that generates the commit messages for you
-
lightspeed-astro
The new protocol for astronomical devices communication
-
bayes_estimate
Bayesian estimation library. Kalman filter, Informatiom, Square root, Information root, Unscented and UD filters. Numerically and dimensionally generic implementation using nalgebra…
-
nthash
ntHash is a rolling hash function for hashing all possible k-mers in a DNA sequence
-
bam2seq
Extract reads and reconstructed references from a .bam file using CIGAR and MD tags
-
folia
High-performance library for handling the FoLiA XML format (Format for Linguistic Annotation)
-
fenris-quadrature
Quadrature rules for finite element applications
-
codenano
A library for editing DNA molecular designs
-
htsget-http
Framework independent code for handling HTTP in htsget-rs
-
balsa
Reference implementation for the Balsa molecular line notation
-
galileo-osnma
Galileo OSNMA (Open Service Navigation Message Authentication)
-
xenon-rs
Rust bindings to the Xenon middleware
-
voyager_client
Crate that contains base clients for interacting with the NASA Open APIs
-
fasta_windows
Make quick statistics in windows from a fasta file
-
jean_core
Core package of jean
-
simpleaf
A rust framework to make using alevin-fry even simpler
-
minimap2-sys
Bindings to libminimap2
-
wigners
Compute Wigner 3j and Clebsch-Gordan coefficients in pure Rust
-
data_reader
A data loading library for data scientist
-
eyepiece
A crate to generate star fields as seen with different telescopes
-
blis-src
Rust native linking for BLIS library
-
coco-rs
Rust bindings for COCO benchmarking framework
-
bird_tool_utils
Microbial genomics utility functions
-
jean_blosum
BLOSUM feature for jean
-
rebop
A fast stochastic simulator for chemical reaction networks
-
cervo-asset
A unified asset type for Cervo using ONNX or NNEF models
-
d4-bigwig
The libBigWig binding used by D4
-
fenris-solid
Solid mechanics functionality for fenris
-
kocheck
Type checker for the lambda-Pi calculus modulo rewriting
-
gtftools
A barebones GTF toolkit with fast nom-based IO
-
pseqsid
Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment
-
physical-quantity
dimension and unit system for general physical physical quantities
-
mmap-bitvec
A library for working with bit-vectors backed by memory-mapped files
-
rhai-sci
Scientific computing in the Rhai scripting language
-
ggetrs
Efficient querying of biological databases from the command line
-
sbrain
A library for evaluating Semantic Brain, a minimalistic multiparadigm programming language optimized for genetic programming applications
-
totsu_f32cuda
CUDA linear algebra operations for
totsu/totsu_core -
mount-ctrl
Giant Magellan Telescope mount control system
-
gmt_dos-clients_io
Giant Magellan Telescope Dynamic Optical Simulation Actor's client
-
cres
Cell resampling for collider events
-
dims_core
Core Utils for Generating Units and Systems
-
spurs
Utilities for setting up and running experiments remotely
-
fitsrs
Implementation of the FITS image parser
-
qwsak
quakeworld swiss army knife, a collection of usefull functionalities
-
marlu
Convenience Rust code that handles coordinate transformations, Jones matrices, I/O. for the Murchison Widefield Array (MWA) radio telescope. Previously known as mwa_rust_core
-
physical_constants
CODATA recommended values of physical constants
-
entrez-rs
Rust wrapper for the Entrez API
-
cervo-runtime
Multi-model multi-agent RL runtime for games
-
yacrd
Using all-against-all read mapping, yacrd performs: computation of pile-up coverage for each read and detection of chimeras
-
metfor
Meteorological formulas and constants
-
circle_boundary
A Rust library to calculate the boundary of a circle, coordinates given in bitmap style discrete integers
-
parallel-processor
Framework to manage asynchronous execution of multiple compute units communicating using messages
-
gc-sequence
a system for encoding safe points for computations running on gc-arena
-
jean_io
I/O library feature for jean
-
mech-program
Organizes Mech cores into a coordinated program
-
pineappl_fastnlo
PineAPPL's interface to fastNLO
-
collenchyma
high-performance computation on any hardware
-
gmt-lom
Giant Magellan Telescope Geometric Linear Optical Transformations
-
jean_cut
Codon usage tables feature for jean
-
sounding-analysis
Types and functions for working with weather soundings
-
chiral-operator
Operators f Chiral: An All-in-One Data Processing Tool
-
hotg-runicos-base-runtime
The runtime side of the runicos/base image
-
staccato
Statistics from the command line
-
philips-isyntax-rs
Rust bindings to the Philips Open Pathology C++ library
-
rasters
Raster processing library
-
nkl
Nuclear Kernel Library
-
cggtts
Package to analyze and create CGGTTS data
-
gchemol-readwrite
Reading/writing chemical objects for gchemol
-
totsu_f64lapack
BLAS/LAPACK linear algebra operations for
totsu/totsu_core -
fanova
A Rust implementation of fANOVA (functional analysis of variance)
-
jean_alignment
Sequence alignment feature for jean
-
stac-async
Asynchronous I/O for stac-rs
-
gmt_mount-ctrl
Giant Magellan Telescope mount control system
-
bioutils
Utilities and alphabets for biological sequence data
-
stac-api
Rust library for the SpatioTemporal Asset Catalog (STAC) API specification
-
ecrs
Evolutionary computation tools & algorithms
-
cosmocalc
A library for cosmological physics calculations
-
relp-bin
An exact linear program solver written in Rust
-
rustycoils
Fast method to compute off-axis magnetic fields for cylindrically symmetric systems of solenoids and current loops
-
cumath
Cuda-based matrix/vector computations
-
jean_macros
Macro library feature for jean
-
chiral-computing-unit
Computing Units of Chiral: An All-in-One Data Processing Tool
-
rgb2spec
Converts RGB colors to reflectance spectra
-
struqture-py
Python interface of struqture, the HQS tool for representing operators, Hamiltonians and open systems
-
thot-data
Rust language bindings for Thot data management and analysis software
-
psdm
Compute a pairwise SNP distance matrix from one or two alignment(s)
-
intc
An implementation of the *-INC method to calculate an empirical FDR for non-targeting controls in CRISPR screens
-
libswe-sys
Astrology lib connected to the C lib Swiss ephemeris (just the c lib)
-
chiral-data
Data Management Module of Chiral: An All-in-One Data Processing Tool
-
creachadair-imath-sys
FFI bindings to creachadair imath
-
galah
Microbial genome dereplicator
-
sce
A library for importing and managing various single-cell matrices
-
konnoohmachi
Efficient spectral smoothing
-
bombuscv-rs
OpenCV based motion detection/recording software built for research on bumblebees
-
pineappl_applgrid
PineAPPL's interface to APPLgrid
-
xch-ceb
XCH - Chemical Equation Balancer
-
bra_ket
A multithreaded circuit model quanutm simulator for state vectors and density matrices
-
chem-eq
Parse chemical equations and balance, get mol ratios and use ΔH
-
colain
A parser for the Common Layer Interface format (.cli)
-
cervo-core
High level APIs for RL in games
-
cteepbd
Computation of energy balance of buildings according to UNE-EN ISO 52000-1:2017 to comply with CTE DB-HE 2018
-
special-fun
Special functions for Rust by binding to the Cephes library
-
myte
A tool for phylogenomic tree building
-
chiral-cli-common
Common Types, Traits and Structs for Chiral Command-Line-Interface
-
findminhs
An efficient branch-and-bound solver for hitting set
-
gosh-model
Chemical model for gosh
-
samfilt
A filtering tool for Sequence Alignment/Map files
-
librna-sys
Low-level bindings for the ViennaRNA library
-
ofps
Framework for efficient processing of optical flows/motion vectors
-
minced-parser
A parser for the output of the MinCED CRISPR array annotation tool
-
chiral-db
ChiralDB: a cheminformatics database written in Rust
-
netcdf-sys
FFI bindings to NetCDF
-
descent
Modelling and automatic differentiation for constrained optimisation
-
fqgrep
Search a pair of fastq files for reads that match a given ref or alt sequence
-
coverm
Read coverage calculator for metagenomics
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openbabel-sys
Native bindings to OpenBabel
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opencl-api
Actively maintained LTS support, OpenCL type associations for Rust
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fetch-hash
Renamed. Please use 'fetch-data' instead
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seqsplitter
Parses fasta records based on list of either header names or regexes
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euphony-graph
parallel graph computation framework
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expjobserver
This is a job server and client for running many experiments across many test platforms. In some sense, it is like a simple cluster manager.
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kaminpar
Rust wrapper around KaMinPar which is a shared-memory parallel tool to heuristically solve the graph partitioning problem
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dos-uid
dos-actors UniqueIdentifier trait
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geotrans
Giant Magellan Telescope Geometric Transformations
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crossref
Implementation of the Crossref API
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alpha-rra
An implementation of the Alpha-RRA algorithm for p-value aggregation on groups of genes
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fq-filter-reads
This is a simple program to filter a fastq file with a provided list of IDs
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ssubmit
Submit sbatch jobs without having to create a submission script
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test_1337
test
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yaiouom-check
Linter for yaiouom. If you're using yaiouom, you want to use yaiouom-checker :)
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gmt_dos-clients_mount
Giant Magellan Telescope Dynamic Optical Simulation Actor's client
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galois_field_2pm
Galois Field (2^M) arithmetic
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seqcomplexity
Calculates per-read and total sequence complexity from FastQ file
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tvm
Rust frontend support for TVM
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poisson-rate-test
Tests the equivalence of Poisson process rates, per Gu 2008 'Testing Ratio of Two Poisson Rates'
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descent_ipopt
IPOPT interface for descent
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atm-refraction
Tools for calculating light paths in the atmosphere
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onemax-oxigen
OneMax simple problem resolution using oxigen
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stoichkit
A stoichiometry toolkit
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reverse
Reverse mode automatic differentiation
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gmt_m1-ctrl_outer-actuators
Giant Magellan Telescope primary mirror control system
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vadeen_osm
IO and builder library for Open Street Map data
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m2-ctrl
Giant Magellan Telescope secondary mirror control system
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comet-rs
Rust eDSL for COMET: domain specific COMpiler for Extreme Targets
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frag_gene_scan_rs
Rust implementation of the gene prediction model for short and error-prone reads
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simple-si-units-core
This is the shared dependencies for crate simple-si-units
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miniprot-sys
Bindings to libminiprot
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descent_macro
Procedural macro for doing source-code differentiation
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gmt_m1-ctrl_center-actuators
Giant Magellan Telescope primary mirror control system
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freesasa-sys
Rust raw FFI bindings for the freesasa C library
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noodles-util
noodles support utilities
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mzsignal
A library for mass spectrometry signal processing
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emcee
Implementation of Python's emcee affine-invariant mcmc ensemble sampler
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cervo
High level APIs for RL in games
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m1-ctrl
Giant Magellan Telescope primary mirror control system
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boolnetevo
Evolve populations of boolean networks to approximate bitstring functions and their (unknown) inverses
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munin-if1sec
munin interface graph plugin, 1second resolution
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proteinogenic
Chemical structure generation for protein sequences as SMILES string
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aws-smt-strings
A library for manipulating SMT-LIB strings and regular expressions
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z_table
Provides lookup functions for the standard normal table, also called Z table
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zoea
Zoea is a crate by and for baby Rustaceans. It contains 'easy' buttons for common things like http get requests, key-value database persistence, and Natural Language Processing.
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sparse21
Sparse Matrix Solver
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libhmmer-sys
Rust bindings to libhmmer and libeasel
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gmt_m1-ctrl_actuators
Giant Magellan Telescope primary mirror control system
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zonebuilder
A crate and command-line interface to create regular geographic zones for urban analysis
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gmt_m1-ctrl_hardpoints-dynamics
Giant Magellan Telescope primary mirror control system
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natural_unit
Physical unit conversion program (SI, CGS, Natural, Geometrized)
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gmt_mount-ctrl_sampling1000-damping002
Giant Magellan Telescope mount control system (1kHz sampling,2% damping)
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hotg-rune-cli
A self-sufficient runtime for TinyML Containers
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cervo-onnx
Extends cervo with ONNX support from tract-onnx
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pyplanetarium
Python bindings for Rust Planetarium rendering library
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node_crunch
A crate for distributed computing
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supports-hyperlinks
Detects whether a terminal supports rendering hyperlinks
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svc-storage-client-grpc
Arrow template service GRPC client
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epics-ca-sys
Raw bindings for EPICS Channel Access library
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ipasir
Bindings for the IPASIR API to communicate with incremental SAT solvers
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sounding-bufkit
Library to parse and load Bufkit sounding files
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tidk
A toolkit for finding telomeric repeats in a genome
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tallystick
tallystick is a rust library for talling votes
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totsu_core
A first-order conic linear program solver for convex optimization
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border
Reinforcement learning library
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fullcodec-plonk
A pure-Rust implementation of the PLONK ZK-Proof algorithm
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mbti
A library to work with Myer-Briggs personality types
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seq_geom_parser
A small crate for parsing library geometry specifications for single-cell sequencing
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gfautil
Command line tools for working with GFA files and related formats
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chronometer
A small stopwatch for rust
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einsum-derive
Proc-macro based einsum implementation
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sourmash
MinHash sketches for genomic data
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gfastats
GFA statistics
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nextlaunch
Watch a countdown until the next rocket launch, live in your terminal!
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alpha_g_detector
A Rust library to handle the raw output of the ALPHA-g detectors
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fitsio-sys-bindgen
FFI wrapper around cfitsio
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gis_puller
Geographic Information System (GIS) datasets acquisition library
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wcomm
API for wireless communications
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cramino
A tool to quickly extract quality metrics from bam or cram files
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hotg-rune-wasm3-runtime
A Rune runtime backed by wasm3
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cervo-nnef
Extends cervo with nnef support from tract-nnef
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parse-monitors
Giant Magellan Telescope Computation Fluid Dynamics Parser
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castep-periodic-table
Periodic-table-like database for relevant usage in CASTEP
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ephemerides
Library for computing the azimuth and elevation of objects in space. Includes the Sun, Moon, Mars, Jupiter, Saturn. Also, human-made satellites can be located via TLE files.
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si-unit-prefix
SI Unit Prefix enum impl as_f64/f32, as_exp, parse_from_str with serde support
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libprosic
A library for calling of genomic variants using a latent variable model
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peroxide-ad
Proc macro for automatic differenitation of Peroxide
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handlegraph
Library for use in variation graphs
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fil-ocl
OpenCL bindings and interfaces for Rust
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sprs_suitesparse_camd
sprs bindings to the suitesparse camd fill-in reducting ordering
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dmio
A shared library providing functionality to read, write and modify files saved in the DigitalMicrograph file format (version 3 or 4)
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cvode-wrap
A wrapper around cvode and cvodeS from sundials, allowing to solve ordinary differential equations (ODEs) with or without their sensitivities
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RAufbau
That program calculates the electron configuration of element that you typed
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thermocouple
thermocouple routines