✓ Uses Rust 2018 edition
|0.3.8||Jan 23, 2020|
|0.3.6||Oct 5, 2019|
|0.3.3||Jul 23, 2019|
|0.1.0||Mar 31, 2019|
#5 in #syntax
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Used in 3 crates (via fastobo)
PEG Syntax and pest parser for the OBO flat file format 1.4
This library is a strict implementation of the OBO flat file format 1.4
syntax using the
pest parser generator. It was outsourced from
fastobo to reduce compilation time, since deriving the
grammar.pest takes some time.
The parser itself is reexported in
fastobo::parser, so there
is probably no need to depend on this crate directly.
The syntax is a strict implementation of the 1.4 format, with the following exceptions:
property_valueclauses can have a value with is not quote-enclosed. This is a workaround to support some ontology files using
owlapito generate their OBO counterpart, which does not quote-enclose property values (owlcs/owlapi#833).
- ISO-8601 datetimes can only be parsed from the canonical format (
ỲYYY-MM-DDTHH:MM:SS) with an optional timezone. Week dates and calendar dates are not supported.
fastobo: Abstract Syntax Tree and data structures for the OBO format version 1.4.
fastobo-py: Idiomatic Python bindings to the
Found a bug ? Have an enhancement request ? Head over to the GitHub issue tracker of the project if you need to report or ask something. If you are filling in on a bug, please include as much information as you can about the issue, and try to recreate the same bug in a simple, easily reproducible situation.
This project was developed by Martin Larralde as part of a Master's Degree internship in the BBOP team of the Lawrence Berkeley National Laboratory, under the supervision of Chris Mungall. Cite this project as:
Larralde M. Developing Python and Rust libraries to improve the ontology ecosystem [version 1; not peer reviewed]. F1000Research 2019, 8(ISCB Comm J):1500 (poster) (https://doi.org/10.7490/f1000research.1117405.1)