Lib.rs

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#fasta #bioinformatics #exon #data #reading #arrow #format

exon-fasta

A library for reading and writing FASTA files with Exon

by Trent Hauck and 2 contributors

75 releases (29 breaking)

new 0.32.4 Dec 21, 2024
0.32.2 Sep 4, 2024
0.29.1 Jul 16, 2024
0.15.0 Mar 27, 2024
0.5.3 Nov 29, 2023

#7 in #exon

Download history 424/week @ 2024-08-30 66/week @ 2024-09-06 105/week @ 2024-09-13 99/week @ 2024-09-20 22/week @ 2024-09-27 12/week @ 2024-10-04 1/week @ 2024-10-11 7/week @ 2024-11-01 1/week @ 2024-11-08 7/week @ 2024-11-15 12/week @ 2024-11-22 158/week @ 2024-12-06 190/week @ 2024-12-13

360 downloads per month
Used in 4 crates (via exon)

Apache-2.0

37KB
617 lines

Exon

Exon is an execution engine designed to work with bioinformatics data. It features:

  • SQL based access to bioinformatics data -- general DML and some DDL support
  • Support for many file formats from bioinformatics, proteomics, and others
  • Local filesystem and object storage support
  • Arrow FFI primitives for multi-language support

Installation

Exon is available via crates.io. To install, run:

cargo add exon

Documentation

  • Rust documentation is available here.
  • General documentation is available here.

Benchmarks

Please see the benchmarks README for more information.

lib.rs:

Crate to support reading FASTA files into Arrow arrays.

Part of the Exon project. See the Exon documentation for more information.

Dependencies

~74MB
~1.5M SLoC