Lib.rs

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#fasta #bioinformatics #datafusion #arrow #ngs #proteomics #sql #exon

exon-fasta

A library for reading and writing FASTA files with Exon

Owned by Trent Hauck.

17 releases

new 0.5.3 Nov 29, 2023
0.5.2 Nov 29, 2023
0.4.3 Nov 27, 2023
0.3.12 Nov 26, 2023
0.3.4-beta.11 Oct 30, 2023

#217 in Biology

Download history 52/week @ 2023-10-22 84/week @ 2023-10-29 261/week @ 2023-11-05 195/week @ 2023-11-12 223/week @ 2023-11-19 533/week @ 2023-11-26

1,215 downloads per month
Used in 3 crates (via exon)

Apache-2.0

26KB
332 lines

Exon

Exon is an analysis toolkit for life-science applications. It features:

  • Support for many file formats from bioinformatics, proteomics, and others
  • Local filesystem and object storage support
  • Arrow FFI primitives for multi-language support
  • SQL based access to bioinformatics data -- general DML and some DDL support

Installation

Exon is available via crates.io. To install, run:

cargo add exon

Documentation

  • Rust documentation is available here.
  • General documentation is available here.

Benchmarks

Please see the benchmarks README for more information.

lib.rs:

Crate to support reading FASTA files into Arrow arrays.

Part of the Exon project. See the Exon documentation for more information.

Dependencies

~61MB
~1M SLoC