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#bioinformatics #bam #data #file-format #exon #arrow #sql

exon-bam

Exon BAM

by Trent Hauck and 2 contributors

76 releases (29 breaking)

new 0.32.3 Dec 15, 2024
0.32.2 Sep 4, 2024
0.31.0 Aug 17, 2024
0.29.1 Jul 16, 2024
0.5.3 Nov 29, 2023

#292 in Biology

Download history 41/week @ 2024-08-26 485/week @ 2024-09-02 113/week @ 2024-09-16 107/week @ 2024-09-23 21/week @ 2024-09-30 13/week @ 2024-10-07 8/week @ 2024-10-28 2/week @ 2024-11-04 19/week @ 2024-11-18 270/week @ 2024-12-09

289 downloads per month
Used in 4 crates (via exon)

Apache-2.0

105KB
2K SLoC

Exon

Exon is an execution engine designed to work with bioinformatics data. It features:

  • SQL based access to bioinformatics data -- general DML and some DDL support
  • Support for many file formats from bioinformatics, proteomics, and others
  • Local filesystem and object storage support
  • Arrow FFI primitives for multi-language support

Installation

Exon is available via crates.io. To install, run:

cargo add exon

Documentation

  • Rust documentation is available here.
  • General documentation is available here.

Benchmarks

Please see the benchmarks README for more information.

Dependencies

~75MB
~1.5M SLoC