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#bioinformatics #vcf #exon #data #arrow #proteomics #primitive

exon-vcf

Exon VCF

by Trent Hauck and 2 contributors

56 releases (27 breaking)

new 0.32.3 Dec 15, 2024
0.32.2 Sep 4, 2024
0.31.0 Aug 17, 2024
0.29.1 Jul 16, 2024
0.5.5 Dec 18, 2023

#2610 in Parser implementations

Download history 409/week @ 2024-08-29 113/week @ 2024-09-05 121/week @ 2024-09-12 100/week @ 2024-09-19 32/week @ 2024-09-26 18/week @ 2024-10-03 5/week @ 2024-10-10 1/week @ 2024-10-17 1/week @ 2024-10-24 12/week @ 2024-10-31 1/week @ 2024-11-07 8/week @ 2024-11-14 15/week @ 2024-11-21 2/week @ 2024-11-28 89/week @ 2024-12-05 233/week @ 2024-12-12

342 downloads per month
Used in 4 crates (2 directly)

Apache-2.0

79KB
1.5K SLoC

Exon

Exon is an execution engine designed to work with bioinformatics data. It features:

  • SQL based access to bioinformatics data -- general DML and some DDL support
  • Support for many file formats from bioinformatics, proteomics, and others
  • Local filesystem and object storage support
  • Arrow FFI primitives for multi-language support

Installation

Exon is available via crates.io. To install, run:

cargo add exon

Documentation

  • Rust documentation is available here.
  • General documentation is available here.

Benchmarks

Please see the benchmarks README for more information.

Dependencies

~74MB
~1.5M SLoC