Lib.rs

› Parser implementations › Exon
#bioinformatics #exon #execution-engine #object-storage #gtf #data-source #file-format

exon-gtf

GTF datasource for Exon

by Trent Hauck and 2 contributors

64 releases (29 breaking)

new 0.32.3 Dec 15, 2024
0.32.2 Sep 4, 2024
0.31.0 Aug 17, 2024
0.29.1 Jul 16, 2024
0.5.3 Nov 29, 2023

#2752 in Parser implementations

Download history 41/week @ 2024-08-24 433/week @ 2024-08-31 41/week @ 2024-09-07 118/week @ 2024-09-14 95/week @ 2024-09-21 26/week @ 2024-09-28 6/week @ 2024-10-05 1/week @ 2024-10-12 3/week @ 2024-10-26 6/week @ 2024-11-02 7/week @ 2024-11-16 12/week @ 2024-11-23 61/week @ 2024-12-07

80 downloads per month
Used in 4 crates (via exon)

Apache-2.0

25KB
356 lines

Exon

Exon is an execution engine designed to work with bioinformatics data. It features:

  • SQL based access to bioinformatics data -- general DML and some DDL support
  • Support for many file formats from bioinformatics, proteomics, and others
  • Local filesystem and object storage support
  • Arrow FFI primitives for multi-language support

Installation

Exon is available via crates.io. To install, run:

cargo add exon

Documentation

  • Rust documentation is available here.
  • General documentation is available here.

Benchmarks

Please see the benchmarks README for more information.

Dependencies

~68MB
~1.5M SLoC