Lib.rs

› Science › Biology › Exon
#exon #bioinformatics #fastq #proteomics #file-format #local-filesystem #sql

exon-fastq

FASTQ support for Exon

by Trent Hauck and 2 contributors

67 releases (29 breaking)

0.32.4 Dec 21, 2024
0.32.2 Sep 4, 2024
0.29.1 Jul 16, 2024
0.15.0 Mar 27, 2024
0.5.3 Nov 29, 2023

#5 in #proteomics

Download history 7/week @ 2024-11-16 12/week @ 2024-11-23 135/week @ 2024-12-07 204/week @ 2024-12-14 213/week @ 2024-12-21 9/week @ 2024-12-28 1/week @ 2025-01-04 4/week @ 2025-01-11 22/week @ 2025-01-18 7/week @ 2025-02-01 167/week @ 2025-02-08 93/week @ 2025-02-15 37/week @ 2025-02-22 20/week @ 2025-03-01

320 downloads per month
Used in 4 crates (via exon)

Apache-2.0

27KB
373 lines

Exon

Exon is an execution engine designed to work with bioinformatics data. It features:

  • SQL based access to bioinformatics data -- general DML and some DDL support
  • Support for many file formats from bioinformatics, proteomics, and others
  • Local filesystem and object storage support
  • Arrow FFI primitives for multi-language support

Installation

Exon is available via crates.io. To install, run:

cargo add exon

Documentation

  • Rust documentation is available here.
  • General documentation is available here.

Benchmarks

Please see the benchmarks README for more information.

lib.rs:

Crate to support reading FASTQ files.

Dependencies

~77MB
~1.5M SLoC