Lib.rs

› Science › Biology › Exon
#bioinformatics #exon #file-format #fastq #data #proteomics #local-filesystem

exon-fastq

FASTQ support for Exon

by Trent Hauck and 2 contributors

66 releases (29 breaking)

new 0.32.3 Dec 15, 2024
0.32.2 Sep 4, 2024
0.31.0 Aug 17, 2024
0.29.1 Jul 16, 2024
0.5.3 Nov 29, 2023

#5 in #proteomics

Download history 39/week @ 2024-08-24 434/week @ 2024-08-31 41/week @ 2024-09-07 115/week @ 2024-09-14 124/week @ 2024-09-21 22/week @ 2024-09-28 5/week @ 2024-10-05 1/week @ 2024-10-12 1/week @ 2024-10-26 5/week @ 2024-11-02 7/week @ 2024-11-16 12/week @ 2024-11-23 84/week @ 2024-12-07

103 downloads per month
Used in 4 crates (via exon)

Apache-2.0

27KB
373 lines

Exon

Exon is an execution engine designed to work with bioinformatics data. It features:

  • SQL based access to bioinformatics data -- general DML and some DDL support
  • Support for many file formats from bioinformatics, proteomics, and others
  • Local filesystem and object storage support
  • Arrow FFI primitives for multi-language support

Installation

Exon is available via crates.io. To install, run:

cargo add exon

Documentation

  • Rust documentation is available here.
  • General documentation is available here.

Benchmarks

Please see the benchmarks README for more information.

lib.rs:

Crate to support reading FASTQ files.

Dependencies

~74MB
~1.5M SLoC