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#fastq #bioinformatics #datafusion #arrow #ngs #proteomics #sql #exon

exon-fastq

FASTQ support for Exon

Owned by Trent Hauck.

9 releases

0.5.3 Nov 29, 2023
0.5.2 Nov 29, 2023
0.4.3 Nov 27, 2023
0.3.12 Nov 26, 2023

#139 in Biology

Download history 104/week @ 2023-11-17 494/week @ 2023-11-24 98/week @ 2023-12-01

696 downloads per month
Used in 3 crates (via exon)

Apache-2.0

24KB
313 lines

Exon

Exon is an analysis toolkit for life-science applications. It features:

  • Support for many file formats from bioinformatics, proteomics, and others
  • Local filesystem and object storage support
  • Arrow FFI primitives for multi-language support
  • SQL based access to bioinformatics data -- general DML and some DDL support

Installation

Exon is available via crates.io. To install, run:

cargo add exon

Documentation

  • Rust documentation is available here.
  • General documentation is available here.

Benchmarks

Please see the benchmarks README for more information.

lib.rs:

Crate to support reading FASTQ files.

Dependencies

~61MB
~1M SLoC