Lib.rs

› Science › Biology › Exon
#bioinformatics #exon #file-format #fastq #data #proteomics #local-filesystem

exon-fastq

FASTQ support for Exon

by Trent Hauck and 2 contributors

65 releases (29 breaking)

0.32.2 Sep 4, 2024
0.31.0 Aug 17, 2024
0.29.1 Jul 16, 2024
0.15.0 Mar 27, 2024
0.5.3 Nov 29, 2023

#335 in Biology


Used in 4 crates (via exon)

Apache-2.0

27KB
373 lines

Exon

Exon is an execution engine designed to work with bioinformatics data. It features:

  • SQL based access to bioinformatics data -- general DML and some DDL support
  • Support for many file formats from bioinformatics, proteomics, and others
  • Local filesystem and object storage support
  • Arrow FFI primitives for multi-language support

Installation

Exon is available via crates.io. To install, run:

cargo add exon

Documentation

  • Rust documentation is available here.
  • General documentation is available here.

Benchmarks

Please see the benchmarks README for more information.

lib.rs:

Crate to support reading FASTQ files.

Dependencies

~74MB
~1.5M SLoC