4 releases
0.2.2 | Feb 3, 2023 |
---|---|
0.2.1 | Feb 1, 2023 |
0.2.0 | Jan 6, 2023 |
0.1.0 | Dec 6, 2022 |
#49 in Science
28 downloads per month
38KB
998 lines
fqkit
🦀 a simple program for fastq file manipulation
install
setp1:install cargo first
curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh
step2:
cargo install fqkit
# or
git clone https://github.com/sharkLoc/fqkit.git
cd fqkit
cargo b --release
# mv target/release/fqkit to anywhere you want
usage
fqkit: a simple program for fastq file manipulation
Usage: fqkit <COMMAND>
Commands:
subfq subsample sequences from big fastq file
stats summary for fastq format file
plot line plot for fastq quaility stats
fq2fa translate fastq to fasta
barcode split barcode for PE reads
remove remove reads by read name
split split interleaved fastq file
help Print this message or the help of the given subcommand(s)
Options:
-h, --help Print help information
-V, --version Print version information
Dependencies
~17MB
~337K SLoC