fqkit

🦀 a simple program for fastq file manipulation

install

setp1：install cargo first

curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh

step2:

cargo install fqkit
# or

git clone https://github.com/sharkLoc/fqkit.git
cd fqkit
cargo b --release
# mv target/release/fqkit to anywhere you want 

usage

fqkit: a simple program for fastq file manipulation

Usage: fqkit <COMMAND>

Commands:
  subfq  subsample sequences from big fastq file
  stats  summary for fastq format file
  plot   line plot for fastq quaility stats
  fq2fa  translate fastq to fasta
  barcode  split barcode for PE reads
  remove   remove reads by read name
  split    split interleaved fastq file
  help   Print this message or the help of the given subcommand(s)

Options:
  -h, --help     Print help information
  -V, --version  Print version information