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› Parser implementations | Science › Biology › Exon
#bioinformatics #bed #object-storage #file-format #exon #primitive #arrow

exon-bed

Subcrate of the exon crate for working with BED files

by Trent Hauck

40 releases (17 breaking)

new 0.20.0 Apr 24, 2024
0.18.0 Apr 23, 2024
0.15.0 Mar 27, 2024
0.5.5 Dec 18, 2023
0.5.3 Nov 29, 2023

#268 in Biology

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1,580 downloads per month
Used in 4 crates (via exon)

Apache-2.0

33KB
585 lines

Exon

Exon is an execution engine designed to work with bioinformatics data. It features:

  • SQL based access to bioinformatics data -- general DML and some DDL support
  • Support for many file formats from bioinformatics, proteomics, and others
  • Local filesystem and object storage support
  • Arrow FFI primitives for multi-language support

Installation

Exon is available via crates.io. To install, run:

cargo add exon

Documentation

  • Rust documentation is available here.
  • General documentation is available here.

Benchmarks

Please see the benchmarks README for more information.

Dependencies

~47–63MB
~1M SLoC