Lib.rs

› Science › Biology | Parser implementations › Exon
#bed #bioinformatics #object-storage #exon #file-format #primitive #arrow

exon-bed

Subcrate of the exon crate for working with BED files

by Trent Hauck and 2 contributors

64 releases (29 breaking)

new 0.32.3 Dec 15, 2024
0.32.2 Sep 4, 2024
0.31.0 Aug 17, 2024
0.29.1 Jul 16, 2024
0.5.3 Nov 29, 2023

#321 in Biology

Download history 42/week @ 2024-08-26 482/week @ 2024-09-02 105/week @ 2024-09-16 95/week @ 2024-09-23 28/week @ 2024-09-30 5/week @ 2024-10-07 8/week @ 2024-10-28 2/week @ 2024-11-04 19/week @ 2024-11-18 283/week @ 2024-12-09

302 downloads per month
Used in 4 crates (via exon)

Apache-2.0

42KB
733 lines

Exon

Exon is an execution engine designed to work with bioinformatics data. It features:

  • SQL based access to bioinformatics data -- general DML and some DDL support
  • Support for many file formats from bioinformatics, proteomics, and others
  • Local filesystem and object storage support
  • Arrow FFI primitives for multi-language support

Installation

Exon is available via crates.io. To install, run:

cargo add exon

Documentation

  • Rust documentation is available here.
  • General documentation is available here.

Benchmarks

Please see the benchmarks README for more information.

Dependencies

~68MB
~1.5M SLoC