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#bioinformatics #bcf #exon #data #file #format #object

exon-bcf

Exon BCF

by Trent Hauck

32 releases (15 breaking)

new 0.20.0 Apr 24, 2024
0.18.0 Apr 23, 2024
0.15.0 Mar 27, 2024
0.5.5 Dec 18, 2023

#4 in #bcf

Download history 44/week @ 2024-01-03 131/week @ 2024-01-10 15/week @ 2024-01-17 302/week @ 2024-01-24 82/week @ 2024-01-31 146/week @ 2024-02-07 41/week @ 2024-02-14 278/week @ 2024-02-21 566/week @ 2024-02-28 603/week @ 2024-03-06 395/week @ 2024-03-13 135/week @ 2024-03-20 211/week @ 2024-03-27 83/week @ 2024-04-03 184/week @ 2024-04-10 1075/week @ 2024-04-17

1,562 downloads per month
Used in 3 crates (via exon)

Apache-2.0

89KB
1.5K SLoC

Exon

Exon is an execution engine designed to work with bioinformatics data. It features:

  • SQL based access to bioinformatics data -- general DML and some DDL support
  • Support for many file formats from bioinformatics, proteomics, and others
  • Local filesystem and object storage support
  • Arrow FFI primitives for multi-language support

Installation

Exon is available via crates.io. To install, run:

cargo add exon

Documentation

  • Rust documentation is available here.
  • General documentation is available here.

Benchmarks

Please see the benchmarks README for more information.

Dependencies

~69MB
~1.5M SLoC