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#bioinformatics #bcf #exon #data #file #format #object

exon-bcf

Exon BCF

by Trent Hauck and 2 contributors

56 releases (27 breaking)

new 0.32.3 Dec 15, 2024
0.32.2 Sep 4, 2024
0.31.0 Aug 17, 2024
0.29.1 Jul 16, 2024
0.5.5 Dec 18, 2023

#282 in Biology

Download history 42/week @ 2024-08-24 445/week @ 2024-08-31 42/week @ 2024-09-07 111/week @ 2024-09-14 72/week @ 2024-09-21 24/week @ 2024-09-28 3/week @ 2024-10-05 1/week @ 2024-10-12 2/week @ 2024-10-26 8/week @ 2024-11-02 7/week @ 2024-11-16 12/week @ 2024-11-23 92/week @ 2024-12-07

111 downloads per month
Used in 3 crates (via exon)

Apache-2.0

90KB
1.5K SLoC

Exon

Exon is an execution engine designed to work with bioinformatics data. It features:

  • SQL based access to bioinformatics data -- general DML and some DDL support
  • Support for many file formats from bioinformatics, proteomics, and others
  • Local filesystem and object storage support
  • Arrow FFI primitives for multi-language support

Installation

Exon is available via crates.io. To install, run:

cargo add exon

Documentation

  • Rust documentation is available here.
  • General documentation is available here.

Benchmarks

Please see the benchmarks README for more information.

Dependencies

~74MB
~1.5M SLoC