Lib.rs

› Parser implementations › Exon
#bioinformatics #file-format #data #exon #data-file #arrow #big-wig

exon-bigwig

Subcrate of the exon crate for working with BigWig files

by Trent Hauck and 2 contributors

35 releases (16 breaking)

0.32.2 Sep 4, 2024
0.31.0 Aug 17, 2024
0.29.1 Jul 16, 2024

#1719 in Parser implementations

Download history 34/week @ 2024-08-23 426/week @ 2024-08-30 64/week @ 2024-09-06 99/week @ 2024-09-13 61/week @ 2024-09-20 18/week @ 2024-09-27 11/week @ 2024-10-04 1/week @ 2024-10-11 8/week @ 2024-11-01 1/week @ 2024-11-08 7/week @ 2024-11-15 12/week @ 2024-11-22 57/week @ 2024-12-06

76 downloads per month
Used in exon

Apache-2.0

45KB
829 lines

Exon

Exon is an execution engine designed to work with bioinformatics data. It features:

  • SQL based access to bioinformatics data -- general DML and some DDL support
  • Support for many file formats from bioinformatics, proteomics, and others
  • Local filesystem and object storage support
  • Arrow FFI primitives for multi-language support

Installation

Exon is available via crates.io. To install, run:

cargo add exon

Documentation

  • Rust documentation is available here.
  • General documentation is available here.

Benchmarks

Please see the benchmarks README for more information.

Dependencies

~77MB
~1.5M SLoC