Lib.rs

› Parser implementations › Exon
#bioinformatics #file-format #big-wig #data #exon #data-file #arrow

exon-bigwig

Subcrate of the exon crate for working with BigWig files

by Trent Hauck and 2 contributors

37 releases (16 breaking)

0.32.4 Dec 21, 2024
0.32.2 Sep 4, 2024
0.29.1 Jul 16, 2024

#1489 in Parser implementations

Download history 93/week @ 2024-09-12 65/week @ 2024-09-19 18/week @ 2024-09-26 13/week @ 2024-10-03 1/week @ 2024-10-10 8/week @ 2024-10-31 1/week @ 2024-11-07 7/week @ 2024-11-14 12/week @ 2024-11-21 35/week @ 2024-12-05 219/week @ 2024-12-12 210/week @ 2024-12-19 6/week @ 2024-12-26

470 downloads per month
Used in exon

Apache-2.0

45KB
829 lines

Exon

Exon is an execution engine designed to work with bioinformatics data. It features:

  • SQL based access to bioinformatics data -- general DML and some DDL support
  • Support for many file formats from bioinformatics, proteomics, and others
  • Local filesystem and object storage support
  • Arrow FFI primitives for multi-language support

Installation

Exon is available via crates.io. To install, run:

cargo add exon

Documentation

  • Rust documentation is available here.
  • General documentation is available here.

Benchmarks

Please see the benchmarks README for more information.

Dependencies

~79MB
~1.5M SLoC