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#sdf #bioinformatics #file-format #exon #proteomics #arrow #object-storage

exon-sdf

Exon SDF

by Trent Hauck and 2 contributors

9 releases (4 breaking)

0.32.2 Sep 4, 2024
0.32.1 Sep 4, 2024
0.31.0 Aug 17, 2024
0.30.1 Aug 1, 2024
0.28.1 Jul 15, 2024

#1240 in Parser implementations


Used in exon

Apache-2.0

1.5MB
904 lines

Exon

Exon is an execution engine designed to work with bioinformatics data. It features:

  • SQL based access to bioinformatics data -- general DML and some DDL support
  • Support for many file formats from bioinformatics, proteomics, and others
  • Local filesystem and object storage support
  • Arrow FFI primitives for multi-language support

Installation

Exon is available via crates.io. To install, run:

cargo add exon

Documentation

  • Rust documentation is available here.
  • General documentation is available here.

Benchmarks

Please see the benchmarks README for more information.

Dependencies

~67MB
~1.5M SLoC