18 releases
0.3.4-beta.5 | Oct 16, 2023 |
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0.3.4-beta.3 | Oct 11, 2023 |
0.3.3-beta.1 | Sep 26, 2023 |
0.2.7-rc.3 | Sep 12, 2023 |
#193 in Biology
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Exon Benchmarks
This page describes the benchmarks for Exon.
UniProt Non-Methionine Amino Acid Counts
This benchmarks shows the performance of counting the number of amino acids from uniprot that do not start with methionine.
UniProt has about 560k sequences.
VCF Query
This benchmark shows querying a 2.6G VCF file for a genomic region.
BAM Query
This benchmark shows querying a 303M BAM file for a genomic region. The same caveat as the VCF query benchmark applies.
MzML Scan
This benchmark shows scanning an MzML file with roughly 6k spectra.
Per-File Parallel FASTA Scan
This benchmark shows scanning 8 FASTA files at different levels of parallelism.
Dependencies
~79MB
~1.5M SLoC