#bioinformatics #exon #rust

app exon-benchmarks

Executable benchmarks for exon

8 releases

new 0.3.3-beta.1 Sep 26, 2023
0.3.2 Sep 21, 2023
0.2.7-rc.3 Sep 12, 2023

#46 in Biology

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Exon Benchmarks

This page describes the benchmarks for Exon.

UniProt Non-Methionine Amino Acid Counts

This benchmarks shows the performance of counting the number of amino acids from uniprot that do not start with methionine.

UniProt has about 560k sequences.

UniProt Non-Methionine Amino Acid Counts

VCF Query

This benchmark shows querying a 2.6G VCF file for a genomic region.

VCF Scan

BAM Query

This benchmark shows querying a 303M BAM file for a genomic region. The same caveat as the VCF query benchmark applies.

SAM Scan

MzML Scan

This benchmark shows scanning an MzML file with roughly 6k spectra.

MzML Scan

Per-File Parallel FASTA Scan

This benchmark shows scanning 8 FASTA files at different levels of parallelism.

Per-File Parallel FASTA Scan

Dependencies

~50–90MB
~1.5M SLoC