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#bioinformatics #sam #exon #data #object-storage #file #sql

exon-sam

Exon SAM

by Trent Hauck and 2 contributors

57 releases (27 breaking)

new 0.32.3 Dec 15, 2024
0.32.2 Sep 4, 2024
0.31.0 Aug 17, 2024
0.29.1 Jul 16, 2024
0.5.5 Dec 18, 2023

#8 in #exon

Download history 51/week @ 2024-08-24 472/week @ 2024-08-31 53/week @ 2024-09-07 105/week @ 2024-09-14 90/week @ 2024-09-21 32/week @ 2024-09-28 11/week @ 2024-10-05 5/week @ 2024-10-12 1/week @ 2024-10-19 5/week @ 2024-10-26 13/week @ 2024-11-02 10/week @ 2024-11-16 17/week @ 2024-11-23 2/week @ 2024-11-30 90/week @ 2024-12-07

119 downloads per month
Used in 4 crates (3 directly)

Apache-2.0

80KB
1.5K SLoC

Exon

Exon is an execution engine designed to work with bioinformatics data. It features:

  • SQL based access to bioinformatics data -- general DML and some DDL support
  • Support for many file formats from bioinformatics, proteomics, and others
  • Local filesystem and object storage support
  • Arrow FFI primitives for multi-language support

Installation

Exon is available via crates.io. To install, run:

cargo add exon

Documentation

  • Rust documentation is available here.
  • General documentation is available here.

Benchmarks

Please see the benchmarks README for more information.

Dependencies

~74MB
~1.5M SLoC