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#bioinformatics #exon #data #proteomics #arrow #multi-language #sql

exon-fcs

Exon FCS

by Trent Hauck and 2 contributors

49 releases (24 breaking)

0.29.1 Jul 16, 2024
0.28.1 Jul 15, 2024
0.15.0 Mar 27, 2024
0.5.5 Dec 18, 2023

#195 in Biology

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1,023 downloads per month
Used in exon

Apache-2.0

6.5MB
586 lines

Exon

Exon is an execution engine designed to work with bioinformatics data. It features:

  • SQL based access to bioinformatics data -- general DML and some DDL support
  • Support for many file formats from bioinformatics, proteomics, and others
  • Local filesystem and object storage support
  • Arrow FFI primitives for multi-language support

Installation

Exon is available via crates.io. To install, run:

cargo add exon

Documentation

  • Rust documentation is available here.
  • General documentation is available here.

Benchmarks

Please see the benchmarks README for more information.

Dependencies

~63MB
~1M SLoC