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#bioinformatics #data #object-storage #data-access #arrow #file-format #proteomics

exon-fcs

Exon FCS

by Trent Hauck and 2 contributors

56 releases (27 breaking)

new 0.32.3 Dec 15, 2024
0.32.2 Sep 4, 2024
0.31.0 Aug 17, 2024
0.29.1 Jul 16, 2024
0.5.5 Dec 18, 2023

#97 in Biology

Download history 144/week @ 2024-08-28 361/week @ 2024-09-04 83/week @ 2024-09-11 74/week @ 2024-09-18 60/week @ 2024-09-25 14/week @ 2024-10-02 3/week @ 2024-10-09 9/week @ 2024-10-30 1/week @ 2024-11-06 5/week @ 2024-11-13 14/week @ 2024-11-20 73/week @ 2024-12-04 202/week @ 2024-12-11

294 downloads per month
Used in exon

Apache-2.0

6.5MB
586 lines

Exon

Exon is an execution engine designed to work with bioinformatics data. It features:

  • SQL based access to bioinformatics data -- general DML and some DDL support
  • Support for many file formats from bioinformatics, proteomics, and others
  • Local filesystem and object storage support
  • Arrow FFI primitives for multi-language support

Installation

Exon is available via crates.io. To install, run:

cargo add exon

Documentation

  • Rust documentation is available here.
  • General documentation is available here.

Benchmarks

Please see the benchmarks README for more information.

Dependencies

~67MB
~1.5M SLoC