12 releases

0.3.3 Jun 28, 2024
0.3.2 Jun 28, 2024
0.3.1 Jul 23, 2022
0.3.0 May 21, 2022
0.1.0 Jul 7, 2020

#381 in Parser implementations

Download history 201/week @ 2024-06-22 70/week @ 2024-06-29 19/week @ 2024-07-06 49/week @ 2024-07-27 12/week @ 2024-09-14 53/week @ 2024-09-21

65 downloads per month
Used in entab-cli

MIT license

6.5MB
7K SLoC

Contains (Cab file, 9KB) 192_1.stg

Entab

This is the main file parsing library and includes support for compression/ decompression, file type inference, and parsers for different file types.

Usage

To parse the IDs out of a FASTA file:

//! use std::fs::File;
//! use entab::readers::fasta::{FastaReader, FastaRecord};
//!
//! let file = File::open("./tests/data/sequence.fasta")?;
//! let mut reader = FastaReader::new(file, None)?;
//! while let Some(FastaRecord { id, .. }) = reader.next()? {
//!     println!("{}", id);
//! }

Other Parsers

Aston - Python - Agilent Chemstation & Masshunter/Thermo DXF/Inficon/etc Chromatography Toolbox - Matlab - Agilent/Thermo/NetCDF/mzXML Isoreader - R - Isodat Unfinnigan - Perl/Python - Thermo RAW seqio - Rust - FASTX

Please let me know if there are others that you find useful that should be added to this list.

Dependencies

~4–5.5MB
~94K SLoC