System Bindings for libminimap2

Use this if you need lower-level bindings for minimap2.

Minimap2 Version

Minimap2 2.28

Breaking Changes

0.1.29

Potentially an issue, derive(copy) is no longer valid for structs where we have implemented a Drop trait. So I've added some newtypes where appropriate. Hopefully it's an invisible change. This is primarily for mm_idx_t. If you use it directly (instead of MmIdx newtype), you need to call mm_idx_destroy() manually.

0.1.18

mm2-fast and minimap2 have diverged. At this point mm2-fast is no longer supported. Please use a previous crate version.

Features

• vendored - Regenerate the bindings from the vendored minimap2 source. Requires llvm installed. Useful to update the bindings to a different version of minimap2.
• simde - Enable simde support (SIMD-everywhere)
• sse - Enable some sse bindings
• zlib-ng - Use zlib-ng
• static - Static compilation

TODO

• Can we decouple from pthread? This would allow Windows and (possibly) WASM compilation.

Changelog

0.1.30 minimap2.2.30

• Update to minimap2 2.30
• Rename some functions for better multi-crate -sys compatabilities

0.1.29 minimap2.2.29

• Update to minimap2 2.29
• Update to 2024 edition
• Remove some noise from the build system
• Remove Drop impl for mm_idx_t. If you use it directly (instead of MmIdx newtype), you need to call mm_idx_destroy() manually.

0.1.21 minimap2.2.28

• Flag functions for IdxOpt and MapOpt @dwpeng
• Syntactic sugar for mm_idx_t to support Drop, Deref, and DerefMut

0.1.20 minimap2.2.28

• Move Drop impl to -sys crate

0.1.19 minimap2.2.28

• Update to minimap2 2.28

0.1.18 minimap2.2.27

• Regenerated bindings
• mm2-fast and minimap2 have diverged

0.1.17 minimap2.2.27

• Updated to newest version of minimap2 @jguhlin
• mm2-fast also received some updates
• Updated deps, rebuilt bindings @jguhlin

0.1.16 minimap2.2.26

• Much better cross-compilation support thanks for @Adoni5

0.1.15 minimap2.2.26

• Huge thanks to @leiste375 for aarch64 compilation!
• Better static linking support

0.1.14 minimap2.2.26

• Fix regression by reverting to minimap2 release version

0.1.13 minimap2.2.26

• Possible fixes for aarch64 compilation
• Cleaner build system
• Early support for cross crate for cross compilation

0.1.12 minimap2.2.26

• Fix bug with SSE2/SSE4...

0.1.11 minimap2.2.26

• More transparent versioning of upstream minimap2
• Update minimap2-sys minimap2 to release 2.26
• minimap2-sys: update libc, bindgen deps
• Better sse support. Renamed sse flag to sse2only, sse4.1 is otherwise enabled by default (if detected)
• Hopefully better macos, aarch64, and NEON support

0.1.10

• Fix bug relating to compiling mm2-fast

0.1.9

• Enable SIMD-everywhere compilation support

0.1.8

• Changed how zlib is compiled
• Dep versions update
• Added SSE compilation feature (Mostly autodetects)

0.1.7

• Make bindgen an optional feature
• zlib support for musl builds