#rna-seq #quantification #long-read #transcriptomics

app oarfish

A fast, accurate and versatile tool for long-read transcript quantification

2 releases

0.3.1 Mar 3, 2024
0.3.0 Mar 2, 2024

#250 in Biology

Download history 145/week @ 2024-02-25 186/week @ 2024-03-03 37/week @ 2024-03-10 2/week @ 2024-03-17 39/week @ 2024-03-31 2/week @ 2024-04-07

58 downloads per month

Custom license

79KB
1.5K SLoC

oarfish: Accurate, fast, and versatile transcript quantification from long-read RNA-seq data

Briefly, oarfish is a program, written in rust, for quantifying transcript-level expression from long-read (i.e. Oxford nanopore cDNA and direct RNA and PacBio) sequencing technologies. For more details on oarfish, please refer to the oarfish documentation.

Dependencies

~34MB
~628K SLoC