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#genomics #gtf-gff #splici #sc-rna-seq #augmented-reference

bin+lib roers

A tool to prepare augmented annotations for single-cell RNA-seq analysis

by Rob Patro, Dongze He

3 releases (breaking)

0.3.0 Oct 28, 2023
0.2.0 Jul 10, 2023
0.1.0 Jun 13, 2023

#540 in Science

Download history 10/week @ 2023-07-28 8/week @ 2023-08-04 5/week @ 2023-08-11 7/week @ 2023-08-18 4/week @ 2023-08-25 3/week @ 2023-09-01 10/week @ 2023-09-08 12/week @ 2023-09-15 5/week @ 2023-09-22 6/week @ 2023-09-29 7/week @ 2023-10-06 6/week @ 2023-10-13 20/week @ 2023-10-20 65/week @ 2023-10-27 45/week @ 2023-11-03 35/week @ 2023-11-10

168 downloads per month
Used in simpleaf

Custom license

35KB
595 lines

roers

A rust library for preparing expanded transcriptome references for quantification with alevin-fry.

Dependencies

~32–43MB
~728K SLoC