1 unstable release
0.1.0 | Jan 29, 2023 |
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#299 in Biology
16KB
109 lines
fq-filter-reads
This is a simple program to filter a fastq file with a provided list of IDs.
Install
Installation from source:
git clone https://github.com/wckdouglas/fq-filter-reads.git
cd fq-filter-reads
cargo install --path .
Usage
$ fq-filter-reads -h
Retaining fastq records with the given ID
Usage: fq-filter-reads [OPTIONS] --in-fastq <IN_FASTQ> --in-id-list <IN_ID_LIST>
Options:
--in-fastq <IN_FASTQ> input fastq file path
--in-id-list <IN_ID_LIST> input id list file, one per line
--inverse only keep reads with ids NOT in the given id list i.e. removing any records with id in the id list
-h, --help Print help
-V, --version Print version
Example
Some test examples can be found under test_script.sh
Dependencies
~19MB
~328K SLoC