5 releases
| 0.1.4 | Oct 3, 2022 |
|---|---|
| 0.1.3 | Oct 3, 2022 |
| 0.1.2 | Oct 3, 2022 |
| 0.1.1 | Sep 20, 2022 |
| 0.1.0 | Sep 20, 2022 |
#312 in Biology
24 downloads per month
34KB
138 lines
Parses fasta records based on list of either header names or regexes
Installation
Source
Download the source code and run
cargo install
Usage
seqsplitter -f path/to/sequence.fastq -l path/to/list.txt
Arguments:
| Parameter | Default | Description |
|---|---|---|
| -f --fasta | - | The path to the FASTQ file to use |
| -l --list | - | List of ids to parse out |
| -r --regex | false | Interpret list as regex |
| -u --assume_unique | false | Assume list is unique and exit when all seqs in list are found |
| -v --version | - | Print version information |
Dependencies
~48MB
~828K SLoC