5 releases
0.1.4 | Oct 3, 2022 |
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0.1.3 | Oct 3, 2022 |
0.1.2 | Oct 3, 2022 |
0.1.1 | Sep 20, 2022 |
0.1.0 | Sep 20, 2022 |
#299 in Biology
34KB
138 lines
Parses fasta records based on list of either header names or regexes
Installation
Source
Download the source code and run
cargo install
Usage
seqsplitter -f path/to/sequence.fastq -l path/to/list.txt
Arguments:
Parameter | Default | Description |
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-f --fasta | - | The path to the FASTQ file to use |
-l --list | - | List of ids to parse out |
-r --regex | false | Interpret list as regex |
-u --assume_unique | false | Assume list is unique and exit when all seqs in list are found |
-v --version | - | Print version information |
Dependencies
~46MB
~804K SLoC