#bioinformatics #rna #secondary-structure

bin+lib rna-algos

Library of Algorithms about RNAs

24 releases

Uses old Rust 2015

0.1.23 Feb 17, 2021
0.1.20 Jan 30, 2021
0.1.17 Dec 4, 2020
0.1.16 Nov 13, 2020
0.1.6 Mar 19, 2018

#287 in Science

Download history 53/week @ 2021-04-02 10/week @ 2021-04-09 83/week @ 2021-04-16 86/week @ 2021-04-23 82/week @ 2021-04-30 17/week @ 2021-05-07 39/week @ 2021-05-14 8/week @ 2021-05-21 8/week @ 2021-05-28 11/week @ 2021-06-04 34/week @ 2021-06-11 7/week @ 2021-06-18 15/week @ 2021-06-25 13/week @ 2021-07-02 12/week @ 2021-07-09 40/week @ 2021-07-16

211 downloads per month
Used in 8 crates (4 directly)

MIT license

3.5MB
1.5K SLoC

Rust 1K SLoC // 0.0% comments Python 443 SLoC // 0.0% comments

Library of Algorithms in RNAs

This library provides algorithms in RNAs. Current available algorithms are the gamma-centroid structure estimator and McCaskill's algorithm. To model RNA secondary structure scoring, Turner 2004 model and CONTRAfold v2.02 model are available. More descriptions of these two scoring models are here.

Author

Heartsh

License

Copyright (c) 2018 Heartsh
Licensed under the MIT license.

Dependencies

~23MB
~193K SLoC