Lib.rs

› Algorithms › SigAlign
#sequence-alignment #bioinformatics #algorithm #sigalign

sigalign-core

A core crate for sigalign

by baku4

2 unstable releases

0.2.0 Jul 19, 2024
0.1.0 Dec 13, 2023

#1467 in Algorithms

Download history 105/week @ 2024-07-14 16/week @ 2024-07-21 6/week @ 2024-07-28 1/week @ 2024-08-25 1/week @ 2024-09-01 20/week @ 2024-09-15 17/week @ 2024-09-22 47/week @ 2024-09-29 3/week @ 2024-10-06

87 downloads per month
Used in 2 crates

MIT license

190KB
4K SLoC

The collection of the most fundamental components to execute the SigAlign algorithm.

The purpose of sigalign-core is to hide the complexity of the detailed implementation of the SigAlign algorithm.

  • sigalign-core allows for lower-level control compared to sigalign crate.
  • sigalign-core can be used to perform more optimized alignment for specific tasks.
  • Implementations for traits such as SequenceStorage and PatternIndex are required (manually or by using sigalign-impl).
  • sigalign-core does not have user-friendly interfaces implemented in sigalign.

Dependencies

~2–3MB
~59K SLoC