#bioinformatics #ont #fast5 #hdf5

rm-frust5-api

A rust wrapper of the HDF5 crate for handling Oxford Nanopore Technologies FAST5 files

3 releases

0.0.3 May 17, 2022
0.0.2 May 17, 2022
0.0.1 May 16, 2022

#1963 in Parser implementations

27 downloads per month

MIT license

7MB
258 lines

Contains (ELF lib, 3.5MB) vbz_plugin/libvbz_hdf_plugin_x86_64.so, (ELF lib, 3MB) vbz_plugin/libvbz_hdf_plugin_aarch64.so, (Mach-o library, 515KB) vbz_plugin/libvbz_hdf_plugin.dylib, (Windows DLL, 210KB) vbz_plugin/vbz_hdf_plugin.dll

RM-FRUST5-API

Manage FAST5 files with rust.


lib.rs:

This crate wraps the most basic functionality of the ONT-FAST5-API for python, but in Rust!

Warning

Very much in alpha and a WIP, I worte this for one specific use case that I had.

Currently it is only possible to read and write FAST5. It uses the HDF5 crate to deal with HDF5 files. It does apply the VBZ plugin to the files.

Dependencies

~5MB
~101K SLoC