Lib.rs

› Science › Biology
#bioinformatics #min-hash #sketch #k-mer #data #sequence #genomics

sourmash

tools for comparing biological sequences with k-mer sketches

Owned by Luiz Irber, ctb.

24 releases (breaking)

0.18.0 Dec 21, 2024
0.17.2 Nov 15, 2024
0.16.0 Oct 15, 2024
0.15.0 Jul 27, 2024
0.1.1 Mar 13, 2018

#33 in Biology

Download history 511/week @ 2024-09-14 1038/week @ 2024-09-21 441/week @ 2024-09-28 71/week @ 2024-10-05 436/week @ 2024-10-12 279/week @ 2024-10-19 399/week @ 2024-10-26 369/week @ 2024-11-02 360/week @ 2024-11-09 403/week @ 2024-11-16 43/week @ 2024-11-23 91/week @ 2024-11-30 198/week @ 2024-12-07 85/week @ 2024-12-14 460/week @ 2024-12-21 99/week @ 2024-12-28

846 downloads per month
Used in jam-rs

BSD-3-Clause

475KB
12K SLoC

sourmash

🦀 Rust API Documentation on docs.rs build-status codecov License: 3-Clause BSD

Compute MinHash signatures for nucleotide (DNA/RNA) and protein sequences.

This is the core library used by sourmash. It exposes a C API that can be called from FFI in other languages, and it is how we use it in Python for building the sourmash application (CLI and Python API).

sourmash is a product of the Lab for Data-Intensive Biology at the UC Davis School of Veterinary Medicine.

Support

Please ask questions and files issues on Github.

Development

Development happens on github at sourmash-bio/sourmash.

Minimum supported Rust version

Currently the minimum supported Rust version is 1.66.0.

Dependencies

~11–20MB
~368K SLoC