8 breaking releases

0.10.0 Oct 8, 2020
0.9.0 Jul 14, 2020
0.8.0 Jun 26, 2020
0.5.0 Feb 9, 2020
0.1.1 Mar 13, 2018

#102 in Science

Download history 13/week @ 2020-06-21 12/week @ 2020-06-28 7/week @ 2020-07-05 37/week @ 2020-07-12 13/week @ 2020-07-19 6/week @ 2020-07-26 18/week @ 2020-08-02 19/week @ 2020-08-09 17/week @ 2020-08-16 2/week @ 2020-08-23 17/week @ 2020-08-30 24/week @ 2020-09-06 3/week @ 2020-09-20 23/week @ 2020-10-04

55 downloads per month

BSD-3-Clause

250KB
6.5K SLoC

sourmash

🦀 Rust API Documentation on docs.rs build-status codecov License: 3-Clause BSD


Compute MinHash signatures for nucleotide (DNA/RNA) and protein sequences.

This is the core library used by sourmash. It exposes a C API that can be called from FFI in other languages, and it is how we use it in Python for building the sourmash application (CLI and Python API).


sourmash is a product of the Lab for Data-Intensive Biology at the UC Davis School of Veterinary Medicine.

Support

Please ask questions and files issues on Github.

Development

Development happens on github at dib-lab/sourmash.

Dependencies

~2–4MB
~79K SLoC