🎼🧬 lightmotif-transfac

(⚠️ Deprecated) A TRANSFAC parser implementation for the lightmotif crate.

🚨 The TRANSFAC parser has been merged into the lightmotif-io crate, use the lightmotif_io::transfac module instead of this crate. 🚨

🗺️ Overview

The TRANSFAC database is a collection of transcription factors with their binding sites. It provides position-specific scoring matrices for individual transcription factors or closesly related groups.

This crate provides a parser to load TRANSFAC binding sites into lightmotif matrices to be used with the accelerated search pipeline. See the lightmotif crate for more information.

💭 Feedback

⚠️ Issue Tracker

Found a bug ? Have an enhancement request ? Head over to the GitHub issue tracker if you need to report or ask something. If you are filing in on a bug, please include as much information as you can about the issue, and try to recreate the same bug in a simple, easily reproducible situation.

📋 Changelog

This project adheres to Semantic Versioning and provides a changelog in the Keep a Changelog format.

⚖️ License

This library is provided under the open-source MIT license.

This project was developed by Martin Larralde during his PhD project at the European Molecular Biology Laboratory in the Zeller team.