#filter #line #sam #fasta #fastq #command-line-tool #vcf

bin+lib filterx

A command line tool to filter data by using python-like syntax

15 releases

0.3.1 Dec 12, 2024
0.3.0 Dec 10, 2024
0.2.12 Nov 28, 2024
0.1.0 Oct 31, 2024

#78 in Biology

Download history 359/week @ 2024-10-28 227/week @ 2024-11-04 247/week @ 2024-11-11 381/week @ 2024-11-18 195/week @ 2024-11-25 323/week @ 2024-12-09

914 downloads per month

MIT and LGPL-3.0-only

225KB
6K SLoC

filterx

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A fast command-line tool to filter lines by column-based expression.

Features

  • 🚀 Filter lines by column-based expression
  • 🎨 Support multiple input formats e.g. vcf/sam/fasta/fastq/gff/bed/csv/tsv
  • 🎉 Cross-platform support
  • 📦 Easy to install
  • 📚 Rich documentations

Installation

Using pip or cargo to install filterx:

pip install filterx
cargo install filterx

Download the latest release from releases.

Documentation

filterx have rich documentations, you can find them in docs.

filterx has a built-in help system, you can use filterx info --list to list all available built-in functions, and use filterx info <command> to get help for a specific function.

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Dependencies

~52–84MB
~1.5M SLoC