#dna #sequence #region

bin+lib sdust

Implementation of symmetric DUST algorithm, with optional CLI

1 unstable release

0.1.0 May 5, 2022

#300 in Biology

Download history 12/week @ 2024-03-29 3/week @ 2024-04-05 1/week @ 2024-05-24 1/week @ 2024-05-31 1/week @ 2024-06-14 7/week @ 2024-06-21 58/week @ 2024-07-05 46/week @ 2024-07-12

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MIT license

17KB
335 lines

Symmetric DUST implementation

Finds low-complexity regions in DNA sequences.

Comes with an optional binary that can be used similarly to dustmasker, although it currently only supports fasta output, both soft, equivalent to --outfmt fasta of dustmasker, or hard that replace all masked bases by Ns.

Dependencies

~0–570KB
~11K SLoC