1 unstable release
0.1.0 | May 5, 2022 |
---|
#300 in Biology
111 downloads per month
17KB
335 lines
Symmetric DUST implementation
Finds low-complexity regions in DNA sequences.
Comes with an optional binary that can be used similarly to dustmasker, although it currently only supports fasta output,
both soft, equivalent to --outfmt fasta
of dustmasker, or hard that replace all masked bases by Ns.
- Paper: https://pubmed.ncbi.nlm.nih.gov/16796549/
- Acknowledgments: https://github.com/lh3/minimap2/blob/master/sdust.c was used to verify input and its logic has been reused
Dependencies
~0–570KB
~11K SLoC