#bioinformatics #sequence #dna #iteration #iterator #position #space

bin+lib rust-seq2kminmers

Construction and iteration of k-min-mers from a DNA sequence

1 unstable release

0.1.0 Sep 17, 2022

#255 in Biology

43 downloads per month

MIT/Apache

37KB
316 lines

rust-seq2kminmers

Rust crate to convert any DNA sequence to an iterator of its kminmers. Uses NtHash1 behind the scenes. Allows fast iteration in HPC-space but reports positions in original sequence space. This crate is useful for rust-mdbg.

Dependencies

~0.4–0.9MB
~20K SLoC