#bus #single-cell #rna-seq #kallisto #scrnaseq

bin+lib phantompurger-rs

Detecting chimeric molecules in scRNAseq

1 unstable release

0.1.0 Sep 21, 2024

#283 in Biology

Download history 19/week @ 2024-09-15 189/week @ 2024-09-22 13/week @ 2024-09-29

221 downloads per month

GPL-3.0-or-later

91KB
1.5K SLoC

Phantompurger in Rust

A Rust version of the PhantompPurger algorithm to remove chimeric molecules from scRNAseq data.

Far from complete, in particular we're not implementing any of the statistical approaches to decide which molecules are chimeras. Rather, this crate (quickly!) creates the input tables to feed into the PhantomPurger statistical framework from bus-files (i.e. kallisto output).

Dependencies

~25–36MB
~634K SLoC