30 releases (10 stable)

Uses new Rust 2021

new 3.0.0 Aug 9, 2022
2.1.2 Aug 8, 2022
2.0.1 Jun 9, 2022
1.3.0 Jun 8, 2022
0.1.0-alpha.3 Jul 22, 2020

#66 in Science

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392 downloads per month
Used in matchtigs

BSD-2-Clause

180KB
4K SLoC

Genome graph.

A Rust crate to represent genome graphs.

Supports mainly bigraphs at the moment.


lib.rs:

A crate to represent genome graphs.

Genome graphs are typically node- or edge-centric bigraphs that store genome strings on their nodes or edges respectively. This crate offers type aliases using the bigraph crate to easily define genome graphs, as well as methods for reading and writing them.

Currently, the format for input and output is the bcalm2 fasta format.

Dependencies

~18MB
~364K SLoC