35 releases (5 major breaking)
5.0.0 | Aug 1, 2023 |
---|---|
4.1.0 | Jun 22, 2023 |
3.0.0 | Jun 1, 2023 |
2.1.1 | Oct 24, 2022 |
0.1.0-alpha.6 | Jul 22, 2020 |
#438 in Math
117 downloads per month
Used in 5 crates
(2 directly)
89KB
2K
SLoC
Bigraph
A Rust crate to represent and operate on bigraphs.
The crate defines traits as abstractions from the concrete graph implementation. At the moment, the only implementation is done via a wrapper over petgraph, which serves as a prototype.
lib.rs
:
A crate to represent a bigraph. Bigraphs are graphs where each node is symmetrically mapped to a unique "mirror" node, and each edge is symmetrically mapped to a unique "mirror" edge.
Note that bigraphs come in two flavours, node- and edge-centric. A node-centric bigraph has edges that are only distinguished by their endpoints, while an edge-centric bigraph's edges are additionally distinguished by their associated data.
This crate implements a simple wrapper around the traitgraph
crate, adding a vector to represent the node-mirror function.
It also implements the edge-mirror function, albeit probably slower than it could be if there was also a vector to map edges.
In the context of node-centric genome graphs, nodes usually represent genome strings and a pair of mirrored nodes represent reverse complements of each other. For edge-centric genome graphs, the same holds for the edges.
Dependencies
~5MB
~82K SLoC