Lib.rs

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#string-representation #genome #bioinformatics #compact #representation #string

compact-genome

Representation of genomes

Owned by Sebastian Schmidt.

50 releases (28 stable)

11.0.0 Nov 18, 2024
10.0.3 Oct 3, 2024
10.0.0 Sep 20, 2024
9.1.0 Sep 19, 2024
0.1.0-alpha.6 Jul 22, 2020

#54 in Biology

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249 downloads per month
Used in 9 crates (5 directly)

BSD-2-Clause

125KB
3K SLoC

Compact Genome

Version Downloads Docs

A Rust crate to represent a genome string in memory.

The crate defines trait abstractions over a genome string, and provides different compact implementations. At the moment, a bitpacked representation along with a basic ASCII representation of the base characters are supported.

lib.rs:

This crate abstracts over the representation of a genome string, allowing for different implementations that are catered to different use-cases.

Dependencies

~1.6–2.4MB
~53K SLoC