Lib.rs

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#genome #representation #compact #string #bioinformatics

compact-genome

Representation of genomes

by sebschmi, Sebastian Schmidt

25 releases (3 stable)

1.2.1 Nov 17, 2022
1.1.0 Jun 1, 2022
0.8.0 Mar 8, 2022
0.4.10 Oct 27, 2021
0.1.0-alpha.6 Jul 22, 2020

#27 in Biology

Download history 35/week @ 2022-12-02 53/week @ 2022-12-09 8/week @ 2022-12-16 17/week @ 2022-12-23 17/week @ 2022-12-30 10/week @ 2023-01-06 14/week @ 2023-01-13 26/week @ 2023-01-20 19/week @ 2023-01-27 36/week @ 2023-02-03 75/week @ 2023-02-10 73/week @ 2023-02-17 45/week @ 2023-02-24 24/week @ 2023-03-03 14/week @ 2023-03-10 14/week @ 2023-03-17

101 downloads per month
Used in 2 crates (via genome-graph)

BSD-2-Clause

71KB
1.5K SLoC

Compact Genome

A Rust crate to represent a genome string in memory.

The crate defines trait abstractions over a genome string, and provides different compact implementations. At the moment, only the basic ASCII representation of the base characters is supported though.

lib.rs:

This crate abstracts over the representation of a genome string, allowing for different implementations that are catered to different use-cases.

Dependencies

~2.5MB
~55K SLoC