This crate provides a set of utilities for generating sequence locators for HIV/SIV sequences resembling the LANL HIV-locator tool.

viRust-Locator

A simplified version of LANL HIV Database HIV Locator tool

Usage

Usage: cargo run -- [OPTIONS] --query

Options:

-q, --query Query sequence

-r, --reference Reference genome, either HXB2 or SIVmm239 [default: HXB2]

-t, --type-query <TYPE_QUERY> Type of query, either nt or aa [default: nt]

-a, --algorithm algorithm for locator, 1 is accurate but slower, 2 is fast but less accurate, suitable for smaller query sequences [default: 1]

-h, --help Print help

-V, --version Print version

License

The package is available as open source under the terms of the MIT License.

Code of Conduct

Everyone interacting in the VirustLocator project's codebases, issue trackers, chat rooms and mailing lists is expected to follow the code of conduct.