17 releases
Uses new Rust 2024
| new 0.5.5 | Jun 15, 2026 |
|---|---|
| 0.4.2 | Dec 19, 2024 |
| 0.4.1 | Sep 3, 2024 |
| 0.3.0 | Jul 8, 2024 |
| 0.2.2 | Nov 6, 2023 |
#497 in Parser implementations
416 downloads per month
Used in 2 crates
(via mzdata)
35KB
763 lines
timsrust
Facade crate for reading Bruker timsTOF data. Re-exports the public API of the
timsrust-* sub-crates so that most users only need a single dependency.
Installation
[dependencies]
timsrust = "0.5"
Optional features:
| Feature | Description |
|---|---|
sdk |
Bruker SDK-backed reading via timsrust-sdk |
patched |
Patched calibration support via timsrust-patched |
Core types
| Type | Description |
|---|---|
TimsTofPath |
Entry point — auto-detects TDF / miniTDF / Parquet from a path string |
SpectrumReader / SpectrumReaderBuilder |
Read MS2 spectra |
PrecursorReader / PrecursorReaderBuilder |
Read precursor information |
MzConverter, ImConverter, RtConverter |
Unit converters (raw → m/z, ion mobility, retention time) |
Sub-crates are also re-exported as modules for lower-level access:
timsrust::core // timsrust-core
timsrust::tdf // timsrust-tdf
timsrust::minidf // timsrust-minitdf
timsrust::centroid // timsrust-centroid
Supported file formats
- TDF — Bruker
.dfolder (analysis.tdf+analysis.tdf_bin) - miniTDF — ProteoScape optimised format (
*.ms2spectrum.bin+*.ms2spectrum.parquet) - Parquet spectra — columnar spectrum storage
Usage
use timsrust::{TimsTofPath, TimsTofPathLike};
let path = TimsTofPath::new("/data/sample.d")?;
// Read all spectra in parallel
let reader = path.spectrum_reader()?;
// Read precursors
let precursors = path.precursor_reader()?;
Dependencies
~28MB
~674K SLoC