#ena #interact #archive #nucleotide #european #rust-lang #fastq

app rust-ena

ena-crate interacts directly with the European Nucleotide Archive(ENA)

1 unstable release

new 0.1.0 Oct 20, 2024

#68 in Biology

Download history 83/week @ 2024-10-15

83 downloads per month

Custom license

7KB

ena-rust

  • a rustlang command line application to access ena and download files asynchronously.
  • made for high performance computing where you can put the project numbers and links will be ready.
  • just specify the project number and your files will be ready.
cargo install --path . 
or 
cargo build 

╭─gauavsablok@gauravsablok ~/Desktop/rust/ena-rust on main ✘
╰$ ./target/release/rust-ena PRJEB55343
PRJEB55343           100% [====================>]     688     --.-KB/s
                          [Files: 1  Bytes: 688 ]
wget ftp.sra.ebi.ac.uk/vol1/fastq/ERR100/071/ERR10084071/ERR10084071_1.fastq.gz
wget ftp.sra.ebi.ac.uk/vol1/fastq/ERR100/071/ERR10084071/ERR10084071_2.fastq.gz
wget ftp.sra.ebi.ac.uk/vol1/fastq/ERR100/064/ERR10077564/ERR10077564.fastq.gz

Gaurav Sablok

Dependencies

~4–13MB
~145K SLoC