sentence-kmer

• sentence based sequence selector for the transformers and also for the graph algorithms. implementation: profiling the uniquekmer and then checking the presence of the shared kmer across the sequences and then estimating the kmer ratio. This allows for the sequences that already having a high similarity ratio are likely to have some suffix tree and can be excluded from building the graphs and will create the graph in less time.
• please see the last commit message and if it says compiled binary then it is completed or else still in development version.

 cargo build

14:10:05 gauravsablok@genome sentence-kmer main ? ./identity-kmers -h
sequence similarity based on shared kmers

Usage: identity-kmers <COMMAND>

Commands:
 sequence  profile the similarity based on the observed kmer
 help      Print this message or the help of the given subcommand(s)

Options:
 -h, --help     Print help
 -V, --version  Print version
14:10:10 gauravsablok@genome sentence-kmer main ? ./identity-kmers sequence -h
profile the similarity based on the observed kmer

Usage: identity-kmers sequence <SEQUENCEPATH> <SEQUENCEKMER>

Arguments:
 <SEQUENCEPATH>  provide the path to sequence file
 <SEQUENCEKMER>  provide the kmer to be profiled for the sequence similarity

Options:
 -h, --help  Print help

• to run the compiled binary

14:06:49 gauravsablok@genome sentence-kmer main ? 
   ./target/debug/identity-kmers sequence ./samplefile/sample.fasta 4
The sequence similarity and the clustering of the sequences based on 
    the kmer means have been written: Ok("The sequence similarity scores and the cluster of the sequences have been written")

Gaurav Sablok