34 releases (12 breaking)

new 0.13.0 Feb 21, 2025
0.11.2 Jan 22, 2025
0.11.0 Dec 20, 2024
0.9.0 Nov 29, 2024

#103 in Biology

Download history 1286/week @ 2024-11-19 568/week @ 2024-11-26 1150/week @ 2024-12-03 581/week @ 2024-12-10 218/week @ 2024-12-17 36/week @ 2024-12-24 46/week @ 2024-12-31 242/week @ 2025-01-07 37/week @ 2025-01-14 397/week @ 2025-01-21 18/week @ 2025-01-28 46/week @ 2025-02-04 9/week @ 2025-02-11

475 downloads per month
Used in 5 crates

MIT license

98KB
2.5K SLoC

common kits

  • gsbam: bam related kits
  • fastx_reader: fasta/fastq reader
  • file_reader: bed and vcf reader
  • pbar: progress bar
  • samtools: call samtools shell command
  • dna: dna utils
  • phreq: phreq and quality utils

ChangeLog

0.9.0

0.8.6

    • phreq.rs
    • gsbam::build_pg_header, gsbam::read_bam
    • ds::name2idx_and_seq, ds::name2seq, ds::idx2name_and_seq

0.8.2

  • compute_qend

Dependencies

~27–39MB
~637K SLoC