#genomics #chain #features

chainfile

A crate for working with genomics chain files

3 unstable releases

0.2.1 Sep 9, 2023
0.2.0 Apr 24, 2023
0.1.0 Mar 30, 2023

#127 in Biology

Apache-2.0/MIT

185KB
2.5K SLoC

chainfile

CI: Status crates.io version crates.io downloads License: Apache 2.0 License: MIT

A crate for working with genomics chain files.
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Guiding Principles

This crate is written in the style of noodles, as it was originally intended to be included as a pull request. After discussion with the maintainer of noodles, we decided this should be its own, complimentary crate.

📚 Getting Started

To include this crate in your project, simply use the following command.

cargo add chainfile

You can take a look at the examples to get a sense of how to use the crate.

🖥️ Development

To bootstrap a development environment, please use the following commands.

# Clone the repository
git clone git@github.com:stjude-rust-labs/chainfile.git
cd chainfile

# Build the crate in release mode
cargo build --release

# List out the examples
cargo run --release --example

🚧️ Tests

Before submitting any pull requests, please make sure the code passes the following checks.

# Run the project's tests.
cargo test --all-features

# Ensure the project doesn't have any linting warnings.
cargo clippy --all-features

# Ensure the project passes `cargo fmt`.
cargo fmt --check

Minumum Supported Rust Version (MSRV)

This crate is designed to work with Rust version 1.72.0 or later. It may, by happenstance, work with earlier versions of Rust.

🤝 Contributing

Contributions, issues and feature requests are welcome! Feel free to check issues page.

📝 License

This project is licensed as either Apache 2.0 or MIT at your discretion.

Copyright © 2023-Present St. Jude Children's Research Hospital.

Dependencies

~210KB