1 unstable release
0.1.0 | Aug 21, 2024 |
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#10 in #metagenomics
49KB
1K
SLoC
Bracken-rust
0.Installation Instructions
To install bracken-rust, follow these steps:
- Download the appropriate version for your system:
Navigate to the Releases page of the bracken-rust GitHub repository. Select the release suitable for your operating system. For example, if you are using CentOS 7, download bracken-rust-${VERSION}-centos7.tar.gz, where ${VERSION} is the version number of the release you wish to install.
- Extract the downloaded archive:
Open a terminal. Use the tar command to extract the files from the archive
tar -xvf bracken-rust-${VERSION}-centos7.tar.gz
1. Get Started
$ ./bracken -h
Usage: bracken <COMMAND>
Commands:
kmer2read-distr bracken kmer2read_distr
kmer-distrib Evaluates genome read distribution and estimates reads per species for specific taxonomy IDs.
est-abundance Estimates species or genus level abundance from Kraken outputs using Bayesian methods.
help Print this message or the help of the given subcommand(s)
Options:
-h, --help Print help
-V, --version Print version
Dependencies
~5–11MB
~117K SLoC