1 release (0 unstable)
1.2.1-preview | Aug 7, 2024 |
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#874 in Algorithms
240KB
5K
SLoC
This module contains bindings for the alignment algorithms used in biodiff.
The main interface are the methods of the AlignAlgorithm
struct.
If handling of selections and semiglobal alignment is needed, the AlignInfo
struct
should be used.
Before running the alignment, the parameters should be checked with the AlignAlgorithm::check_parameters
or AlignInfo::check_parameters
methods.
Most methods are meant for a gradual alignment of files, but the AlignAlgorithm::align_whole
method is the simplest interface and can be used to align two files as a whole synchronously.
The gradual alignment first sends an AlignedMessage::Initial
message with the initial block of bytes,
then sends AlignedMessage::Append
and AlignedMessage::Prepend
messages with the rest of the bytes.
Dependencies
~18MB
~305K SLoC