💥 spars: disk-based sparse matrix tools

spars is a memory-efficient tool for working with sparse matrices in the Matrix Market format on-disk.

Usage

Subset a matrix on-disk:

spars subset -i <matrix.mtx> --rows <row_index.txt> --cols <col_index.txt> -o <matrix_subset.mtx>

Compute matrix statistics (nonzero count, sum, mean, variance, standard deviation, min, max) for each row and column:

spars stats -i <matrix.mtx> -o <filename>

Installation

From cargo

cargo install spars

From GitHub

To compile, clone the git repo and run cargo install:

git clone git@github.com:stuart-lab/spars.git
cd spars; cargo install --path .

Precompiled binaries are also available in the release