#bioinformatics #genomics #micro #sequence-analysis

microBioRust-seqmetrics

Microbiology friendly bioinformatics Rust functions

1 unstable release

0.1.1 Jan 17, 2025

#236 in Biology

MIT license

105KB
1.5K SLoC

This is a workspace for generating protein data such as molecular weight and hydrophobicity values


lib.rs:

The aim of this crate is to provide Microbiology friendly Rust functions for bioinformatics.

With the genbank parser, you are able to parse a genbank format file, then write into gff3 format

It is also possible to print the DNA sequences extracted from the coding sequences (genes, ffn format), plus the protein fasta sequences (faa format).

Additionally, you can create new features and records and save them either in genbank or gff3 format

Dependencies

~20MB
~344K SLoC