#chromosome #distribution #calculations #distance #package #data #genomic-distributions

bin+lib gdrs

A rust implementation of GenomicDistributions package from bioconductor

4 releases

0.1.3 Mar 28, 2024
0.1.2 Mar 28, 2024
0.1.1 Mar 26, 2024
0.1.0 Mar 26, 2024

#147 in Biology

MIT license

14KB
286 lines

gdrs

gdrs is a rust implementation of the GenomicDistributions package.

Roadmap

Ideally, we would like to implement all the features of the original package. However, we are starting with the basic features and will add more features as we go along. There currently are no plans to implement the plotting features of the original package, just the data generation features:

  • Chromosome distribution
  • Neighbor distances
  • GC content
  • Partition calculations
  • Cumulative partition calculations
  • Distance to TSS
  • Dinucleotide frequency

Installation

cargo add gdrs

Dependencies

~18–28MB
~402K SLoC