12 stable releases
1.11.0 | Jan 23, 2024 |
---|---|
1.10.0 | Nov 24, 2023 |
1.7.0 | Oct 30, 2023 |
1.3.0 | Sep 23, 2023 |
0.1.0 | Sep 5, 2023 |
#108 in Biology
113 downloads per month
460KB
2.5K
SLoC
Omictools
Constant data
Constant data like element masses are provided as CSV-file and gets compiled on build time (see: build.rs).
- Amino acid data is used from: https://proteomicsresource.washington.edu/protocols06/masses.php
- Elements data is used from: https://proteomicsresource.washington.edu/protocols06/masses.php
- Subatomic particles data is used from en.wikipedia.org/wiki/(Proton|Electron|Neutron) (need better source)
Installation
cargo add dihardts_omicstools
Development
Dependencies
- Rust
- OpenSSL (Ubuntu:
libssl-dev
)
Unit tests
- For testing the taxonomy reader a
taxdmp.zip
is required. The test is capable of download it by itself and save it to the tmp folder, however if you plan excessive testing over a couple of reboots, download it ones and set the environment variableTAXDMP_ZIP_PATH
with the path to the file.
Dependencies
~17MB
~297K SLoC