codonrs

Calculate relative synonymous codon usage (RSCU) for coding DNA sequences (CDS).

Usage

codonrs [Optional: -t <translation table>] -i <input.fasta> -o <prefix for output CSV files>

• <translation table> - (Optional) an integer representing the translation table to use, following NCBI numbering. Defaults to 1.
• input.fasta - a multi fasta file containing DNA sequences to be analysed.