26 releases (9 breaking)

new 0.12.5 Apr 10, 2025
0.12.3 Mar 21, 2025
0.6.6 Dec 18, 2024
0.6.0 Nov 29, 2024

#183 in Biology

Download history 52/week @ 2024-12-22 53/week @ 2024-12-29 62/week @ 2025-01-05 35/week @ 2025-01-12 201/week @ 2025-01-19 161/week @ 2025-01-26 438/week @ 2025-02-02 28/week @ 2025-02-09 18/week @ 2025-02-16 123/week @ 2025-02-23 86/week @ 2025-03-02 4/week @ 2025-03-09 298/week @ 2025-03-16 81/week @ 2025-03-23 10/week @ 2025-03-30 235/week @ 2025-04-06

624 downloads per month
Used in 2 crates

MIT license

100KB
2K SLoC

# sbr2smc.aligned.bam and it's corresponding .bam file will be generated
asts -q subreads.bam -t smc.bam -p sbr2smc.aligned

chagelog

0.9.2

  • Don't execute fallback alignment when the first stage alignment get enough aligned result.

0.9.1

  • reporter bug fix

0.9.0

  • reporter
  • gsmm2(0.20 -> 0.22)
  • identity_gap_compressed instead of identity_without_long_indel(10)

0.8.0

  • using hpc
  • default kmer/wins and fallback kmer/wins

0.7.1

  • length filter when add sbr to SubreadsAndSmc
  • log file

0.4.0

  • dw,cr,ar and qual from sbr.bam will dump the result bam
  • worked for smc reads that length < 200 && >200

0.3.0

  • add ch tag to bam record

0.2.1

  • worked

0.1.1

0.1.0

Dependencies

~35–48MB
~798K SLoC