17 releases (6 breaking)

new 0.8.0 Jan 26, 2025
0.6.6 Dec 18, 2024
0.6.0 Nov 29, 2024

#8 in #aligned

Download history 719/week @ 2024-11-19 283/week @ 2024-11-26 507/week @ 2024-12-03 94/week @ 2024-12-10 109/week @ 2024-12-17 78/week @ 2024-12-24 20/week @ 2024-12-31 77/week @ 2025-01-07 12/week @ 2025-01-14 277/week @ 2025-01-21

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Used in 2 crates

MIT license

52KB
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# sbr2smc.aligned.bam and it's corresponding .bam file will be generated
asts -q subreads.bam -t smc.bam -p sbr2smc.aligned

chagelog

0.8.0

  • using hpc
  • default kmer/wins and fallback kmer/wins

0.7.1

  • length filter when add sbr to SubreadsAndSmc
  • log file

0.4.0

  • dw,cr,ar and qual from sbr.bam will dump the result bam
  • worked for smc reads that length < 200 && >200

0.3.0

  • add ch tag to bam record

0.2.1

  • worked

0.1.1

0.1.0

Dependencies

~33–45MB
~743K SLoC