Lib.rs

Issues found

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• phylodm

  • Dependency pyo3 0.21.2 is significantly outdated

    Upgrade to 0.23.5 to get all the fixes, and avoid causing duplicate dependencies in projects.

    In Cargo, different 0.x versions are considered incompatible, so this is a semver-major upgrade.

    pyo3 versions

  • Published crate doesn't match its repository

    Verified 45 out of 48 files (includes 3 Cargo-generated).

    • warning: Crate tarball has been published from a different commit than the commit tagged by git tag 'v3.2.0'.
      • Create git tags after comitting any changes, and commit changes after bumping versions and running cargo update.

    Files in the crates.io crate compared to the repository:

    • pyproject.toml does not match the repository.
    • CITATION.cff does not match the repository.
    • Cargo.toml exists, but elsewhere in the repo.
    • Cargo.toml.orig does not match the repository.
    • Cargo.lock does not match the repository.

    Fetched https://github.com/aaronmussig/phylodm.git e4ab08a112c07f61e058f4e781db6295af5f75dc.

    Checked on 2024-10-13

    This check is experimental.

    Forum thread

  • Dependency derive_more 1.0.0 is outdated

    Upgrade to 2.0.1 to get all the fixes, and avoid causing duplicate dependencies in projects.

    Easy way to bump dependencies: cargo install cargo-edit; cargo upgrade -i; Also check out Dependabot service on GitHub.

    derive_more versions

  • Dependency itertools 0.13 is outdated

    Upgrade to 0.14.0 to get all the fixes, and avoid causing duplicate dependencies in projects.

    itertools versions

  • Dependency ndarray 0.15.6 is outdated

    Consider upgrading to 0.16.1 to get all the fixes and improvements.

    ndarray versions

  • Dependency numpy 0.21.0 is outdated

    Upgrade to 0.23.0 to get all the fixes, and avoid causing duplicate dependencies in projects.

    numpy versions

  • Missing categories

    Categories improve browsing of lib.rs and crates.io. Add categories = ["mathematics"] to the Cargo.toml.

    Even if there are no categories that fit precisely, pick one that is least bad. You can also propose new categories in crates.io issue tracker.

    List of available categories

  • Missing keywords

    Help users find your crates. Add keywords = ["distance-matrix", "phylogenetic", "tree", "calculations", "python"] (up to 5) to the Cargo.toml. Best keywords are alternative terms or their spellings that aren't in the name or description. Also add a keyword that precisely categorizes this crate and groups it with other similar crates.

  • Optional dependency 'numpy' exposed as an implicit feature

    Cargo automatically makes publicly-available crate features for every optional dependency, unless the dependencies are referenced using dep: syntax. Features 'numpy', 'pyo3' may have been unintentional.

    Crate features

• vtracker

  • Missing categories

    Categories improve browsing of lib.rs and crates.io. Add categories = ["…"] to the Cargo.toml.

    List of available categories

  • Missing keywords

    Help users find your crates. Add keywords = ["versions", "tracking", "membership", "across", "group"] (up to 5) to the Cargo.toml. Best keywords are alternative terms or their spellings that aren't in the name or description. Also add a keyword that precisely categorizes this crate and groups it with other similar crates.

• rsrq

  • Dependency terminal_size 0.2.6 is significantly outdated

    Consider upgrading to 0.4.1 to get all the fixes and improvements.

    terminal_size versions

  • Dependency env_logger 0.10.0 is outdated

    Consider upgrading to 0.11.6 to get all the fixes and improvements.

    env_logger versions

  • Dependency hostname 0.3.1 is a bit outdated

    Consider upgrading to 0.4.0 to get all the fixes and improvements.

    hostname versions

  • Dependency redis 0.23.3 is outdated

    Consider upgrading to 0.29.1 to get all the fixes and improvements.

    redis versions

  • Failed to verify create's content against its repository

    Verified 60 out of 61 files (includes 1 Cargo-generated).

    • warning: The crates.io package has no commit hash associated with it.
      • Publish a new version, without using --allow-dirty flag. Make sure all changes are committed before publishing. Use include/exclude in Cargo.toml to omit unnecessary files.

    Files in the crates.io crate compared to the repository:

    • CHANGELOG.md does not match the repository.

    Fetched https://github.com/aaronmussig/rsrq.git tagged v1.1.0 (5125173fe8505ab8ef32d90cb058b499900e9d04).

    Checked on 2024-07-28

    Forum thread

  • Missing categories

    Categories improve browsing of lib.rs and crates.io. Add categories = ["database"] to the Cargo.toml.

    List of available categories

  • Missing keywords

    Help users find your crates. Add keywords = ["job-queue", "redis-queue", "worker", "process", "snakemake"] (up to 5) to the Cargo.toml. Best keywords are alternative terms or their spellings that aren't in the name or description. Also add a keyword that precisely categorizes this crate and groups it with other similar crates.

• prole

  • Dependency bio 1.4.0 is outdated

    Upgrade to 2.2.0 to get all the fixes, and avoid causing duplicate dependencies in projects.

    bio versions

  • Dependency derive_more 0.99.17 is outdated

    Consider upgrading to 2.0.1 to get all the fixes and improvements.

    derive_more versions

  • Dependency env_logger 0.10.1 is outdated

    Upgrade to 0.11.6 to get all the fixes, and avoid causing duplicate dependencies in projects.

    env_logger versions

  • Failed to verify create's content against its repository

    Verified 33 out of 34 files (includes 1 Cargo-generated).

    • warning: The crates.io package has no commit hash associated with it.
      • Publish a new version, without using --allow-dirty flag. Make sure all changes are committed before publishing. Use include/exclude in Cargo.toml to omit unnecessary files.

    Files in the crates.io crate compared to the repository:

    • CHANGELOG.md does not match the repository.

    Fetched https://github.com/aaronmussig/prole.git tagged v1.3.1 (29d7b9ef1832a7368fcbeff26b1d729c57f570eb).

    Checked on 2024-08-04

    Forum thread

  • Missing categories

    Categories improve browsing of lib.rs and crates.io. Add categories = ["science::bio"] to the Cargo.toml.

    List of available categories

  • Missing keywords

    Help users find your crates. Add keywords = ["reusable", "collection", "methods", "free", "own"] (up to 5) to the Cargo.toml. Best keywords are alternative terms or their spellings that aren't in the name or description. Also add a keyword that precisely categorizes this crate and groups it with other similar crates.

• cytos

  • Dependency bio 1.4.0 is outdated

    Consider upgrading to 2.2.0 to get all the fixes and improvements.

    bio versions

  • Dependency env_logger 0.10.1 is outdated

    Consider upgrading to 0.11.6 to get all the fixes and improvements.

    env_logger versions

  • Dependency rand 0.8.5 is a bit outdated

    Consider upgrading to 0.9.0 to get all the fixes and improvements.

    rand versions

  • Failed to verify create's content against its repository

    Verified 48 out of 49 files (includes 1 Cargo-generated).

    • warning: The crates.io package has no commit hash associated with it.
      • Publish a new version, without using --allow-dirty flag. Make sure all changes are committed before publishing. Use include/exclude in Cargo.toml to omit unnecessary files.

    Files in the crates.io crate compared to the repository:

    • CHANGELOG.md does not match the repository.

    Fetched https://github.com/aaronmussig/cytos.git tagged v1.2.1 (a59d6540d6c26c96328cba8280ba2c2df8afa60f).

    Checked on 2024-07-28

    Forum thread

  • Missing categories

    Categories improve browsing of lib.rs and crates.io. Add categories = ["science::bio"] to the Cargo.toml.

    List of available categories

  • Missing keywords

    Help users find your crates. Add keywords = ["bioinformatics", "collection", "command", "scripts-tasks", "list"] (up to 5) to the Cargo.toml. Best keywords are alternative terms or their spellings that aren't in the name or description. Also add a keyword that precisely categorizes this crate and groups it with other similar crates.

• prole, rsrq, cytos

  • The Cargo package has no git commit information

    Before publishing a package, make sure all packaged files are committed to the repository, and there are no "dirty" files. Push this commit to crate's public repository.

    To protect against supply chain attacks similar to CVE-2024-3094, lib.rs will soon start flagging non-reproducible packages without public source code as suspicious. Currently only git repositories are supported (but may be hosted anywhere, not just GitHub). If you'd like a different SCM supported, please file a feature request.

    More info

If some of these crates are unmaintained and shouldn't be checked, yank them or add [badges.maintenance]
status = "deprecated" to their Cargo.toml.