#dna #biology #genetic #sequence #model #reference #stephens

li-stephens

An implementation of the Li+Stephens model for predicting the likelihood of a test sequence given a reference set of haplotypes

1 unstable release

0.1.0 Jun 17, 2022

#1511 in Math


Used in li_stephens_py_hkhan

MIT/Apache

6KB
77 lines

This is a crate implementing the Li and Stephens model of the relationship between DNA sequences in a population. While it does not have generative capabilities yet, it does have the ability to predict the liklihood of a new DNA sequence having been taken from a reference population.

Dependencies

~1.5MB
~25K SLoC