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0.3.0 | Jun 13, 2024 |
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0.2.3 | Jun 13, 2024 |
0.2.2 | Jun 13, 2024 |
#1292 in Algorithms
46 downloads per month
91KB
1.5K
SLoC
kmeans_smid
kmeans_smid is a small and fast library for k-means clustering calculations. It fixes smid problem from kmeans crate. Here is a small example, using kmean++ as initialization method and lloyd as k-means variant:
use kmeans_smid::*;
fn main() {
let (sample_cnt, sample_dims, k, max_iter) = (20000, 200, 4, 100);
// Generate some random data
let mut samples = vec![0.0f64;sample_cnt * sample_dims];
samples.iter_mut().for_each(|v| *v = rand::random());
// Calculate kmeans, using kmean++ as initialization-method
let kmean = KMeans<f64, 8>::new(samples, sample_cnt, sample_dims);
let result = kmean.kmeans_lloyd(k, max_iter, KMeans::init_kmeanplusplus, &KMeansConfig::default());
println!("Centroids: {:?}", result.centroids);
println!("Cluster-Assignments: {:?}", result.assignments);
println!("Error: {}", result.distsum);
}
Datastructures
For performance-reasons, all calculations are done on bare vectors, using hand-written SIMD intrinsics from the packed_simd
crate. All vectors are stored row-major, so each sample is stored in a consecutive block of memory.
Supported variants / algorithms
- lloyd (standard kmeans)
- minibatch
Supported centroid initialization methods
- KMean++
- random partition
- random sample
Dependencies
~2MB
~40K SLoC